
PFRMAT FRV1
REMARK ========================================================================
AUTHOR Willie Taylor and Robin Munro,
AUTHOR Division of Mathematical Biology,
AUTHOR National Institute for Medical Research,
AUTHOR The Ridgeway, Mill Hill, London NW7 1AA, U.K.
AUTHOR w_taylor@nimr.mrc.ac.uk
AUTHOR Tel. +44-181-959-3666 (ext.2298), FAX +44-181-913-8545
REMARK ========================================================================
REMARK Threading results for the target T0014, compared against a
REMARK Database containing 319 Structures (extended UCLA benchmark set).
REMARK 
REMARK ========================================================================
REMARK T0014 3-Dehydroquinase from Salmonella typhimurium (252a.a.)
REMARK T0014 Threading target T0014
SEQRES T0014 MKTVTVKNLIIGEGMPKIIVSLMGRDINSVKAEALAYREATFDILEWRVD
SEQRES T0014 HFMDIASTQSVLTAARVIRDAMPDIPLLFTFRSAKEGGEQTITTQHYLTL
SEQRES T0014 NRAAIDSGLVDMIDLELFTGDADVKATVDYAHAHNVYVVMSNHDFHQTPS
SEQRES T0014 AEEMVSRLRKMQALGADIPKIAVMPQSKHDVLTLLTATLEMQQHYADRPV
SEQRES T0014 ITMSMAKEGVISRLAGEVFGSAATFGAVKQASAPGQIAVNDLRSVLMILH
SEQRES T0014 NA
REMARK ========================================================================
REMARK
REMARK
REMARK THREADING ON 1IPD
REMARK  
REMARK       ..p- USER>>T0014;
REMARK       p-b- USER>>P1;AROD_SALTI
REMARK       b-p- USER>>P1;AROD_ECOLI
REMARK       ..b- USER>>P1ROD_BACSU
REMARK  637
REMARK       p--- USER>>P1;ACU20284
REMARK       b--- USER>>P1;EBSD_ENTFA
REMARK  
REMARK  
REMARK  *USER>>T0014; : 3-Dehydroquinase from Salmonella typhimurium (252a.a.)
REMARK  *USER>>P1;AROD_SALTI :  3-DEHYDROQUINATE DEHYDRATASE (EC 4.2.1.10) (3-DEHYDROQUINASE). - SALMONELLA TYPHI.
REMARK  *USER>>P1;AROD_ECOLI :  3-DEHYDROQUINATE DEHYDRATASE (EC 4.2.1.10) (3-DEHYDROQUINASE). - ESCHERICHIA COLI.
REMARK  *USER>>P1ROD_BACSU :    3-DEHYDROQUINATE DEHYDRATASE (EC 4.2.1.10) (3-DEHYDROQUINASE). - BACILLUS SUBTILIS.
REMARK  *USER>>P1;ACU20284 :    ACU20284 NCBI gi: 644873 - Acinetobacter calcoaceticus
REMARK  *USER>>P1;EBSD_ENTFA :  PROBABLE 3-DEHYDROQUINATE DEHYDRATASE (EC 4.2.1.10) (3-DEHYDROQUINASE). - ENTEROCOCCUS FAECALIS (ST
REMARK  
REMARK  MKTVTVKNLIIGEGMPKIIVSLMGRDINSVKAEALAYREA TFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDIPLLF
REMARK  MKTVTVKNLIIGEGMPKIIVSLMGRDINSVKAEALAYREA TFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDIPLLF
REMARK  MKTVTVKDLVIGTGAPKIIVSLMAKDIASVKSEALAYREA DFDILEWRVDHYADLSNVESVMAAAKILRETMPEKPLLF
REMARK  MNVLTIKGVSIGEGMPKIIIPLMGKTEKQILNEAEAVKLL NPDIVEWRVDVFEKANDREAVTKLISKLRKSLEDKLFLF
REMARK  KSTYVVKNLNIGDLPVKTLVPITAKTREQALAQAKVIAENKDADIAEFRIDLLEFASDTKKVIALGQELNQILKDKPLLA
REMARK  MKPVIVKNVRIGEGNPKIVVPIVAPTAEDILAEATA SQTLDCDLVEWRLDYYENVADFSDVCNLSQQVMERLGQKPLLL
REMARK  
REMARK  TFRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVSRLR
REMARK  TFRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVSRLR
REMARK  TFRSAKEGGEQAISTEAYIALNRAAIDSGLVDMIDLELFTGDDQVKETVAYAHAHDVKVVMSNHDFHKTPEAEEIIARLR
REMARK  TFRTHKEGGSMEMDESSYLALLESAIQTKDIDLIDIELFSGDANVKALVSLAEENNVYVVMSNHDFEKTPVKDEIISRLR
REMARK  TIRTSNEGGKLKVTDQEYEKIYSEYLKKPFMQLLDIEMFRDQAAVAKLTKLAHQKKVLVVMSNHDFDKTPSEQEIVSRLL
REMARK  TFRTQKEGGEMAFSEENYFALYHELVKKGALDLLDIELFANPLAADTLIHEAKKAGIKIVLCNHDFQKTPSQEEIVARLR
REMARK  
REMARK  KMQALGADIPKIAVMPQSKHDVLTLLTATLEMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQASAPGQIAV
REMARK  KMQALGADIPKIAVMPQSKHDVLTLLTATLEMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQASAPGQIAV
REMARK  KMQSFDADIPKIALMPQSTSDVLTLLAATLEMQEQYADRPIITMSMAKTGVISRLAGEVFGSAATFGAVKKASAPGQISV
REMARK  KMQDLGAHIPKMAVMPNDTGDLLTLLDATYTMKTIYADRPIITMSMAATGLISRLSGEVFGSACTFGAGEEASAPGQIPV
REMARK  KQDQMGADILKIAVMPKSKQDVFTLMNATLKVSEQ STKPLLTMSMGRLGTISRIATANMGGSLSFGMIGEASAPGQIDV
REMARK  QMQMRQADICKIAVMPQDATDVLTLLSATNEMYTHYASVPIVTMSMGQLGMISRVTGQLFGSALTFGSAQQASAPGQLSV
REMARK  
REMARK  NDLRSVLMILHNA   
REMARK  NDLRSVLMILHNA   
REMARK  NDLRTVLTILHQA   
REMARK  SELRSVLDILHKNTRG
REMARK  TALKQFLKTVQPTP  
REMARK  QVLRNYLKTFEQNK  
REMARK  
REMARK  
REMARK  2 groups ( 1 aligned )
REMARK  
REMARK  
REMARK  
REMARK  Comparing structure [ 1IPD ] with profile [ >T0014; >P1;AROD_SALTI >P1;AROD_ECOLI >P1ROD_BACSU >P1;ACU20284 >P1;EBSD_ENTFA ]
REMARK   GAPS_wt = 3.000000 PAIR_wt = 0.300000 SECS_wt = 0.500000 PHOB_wt = 0.500000
REMARK   npairs = 3100
REMARK   npairs = 486
REMARK  Domain 1 length = 345 --- threading
REMARK   lena = 345 lenb = 256
REMARK  Observed beta  = 0.243, observed alpha  = 0.432
REMARK   n = 57
REMARK  Predicted beta = 0.246, predicted alpha = 0.434
REMARK   sumss = 5.000000 sssum = 0.000000 ss_wt = 0.000000
REMARK   sumco = 150.613480 cosum = 153.347717 co_wt = 1.018154
REMARK   sumpk = 9450.855469 pksum = 7258.157227 pk_wt = 0.767989
REMARK  Percent sel on aln =   98.00
REMARK  Percent aln in sel =   40.83
REMARK  
REMARK  structure             sequence
REMARK  
REMARK     1 **1 M E ** 137.1 ** H MMMMKM   1
REMARK     2 **1 K E    138.1    E KKKNSK   2
REMARK     3 **1 V E ** 175.8 *  E TTTVTP   3
REMARK     4 **1 A E  * 192.6 ** E VVVLYV   4
REMARK     5 **1 V E ** 172.6 *  E TTTTVI   5
REMARK     6 **1 L E ** 120.4 ** E VVVIVV   6
REMARK     7 **1 P E **  77.2 == E KKKKKK   7
REMARK     8 **1 G    *  33.7    E NNDGNN   8
REMARK     9 **1 D    *  90.8 ** E LLLVLV   9
REMARK    10 **1 G    *  90.8    E IIVSNR  10
REMARK    11 **1 I H  * 104.0 ** E IIIIII  11
REMARK    12 **1 G H  *  87.2 *=   GGGGGG  12
REMARK    13  *1 P H  *  85.9      EETEDE  13
REMARK    14 **1 E H  *  94.5 *    GGGGLG  14
REMARK    15 **1 V H  *  69.5 *    MMAMPN  15
REMARK    16 **1 T H **  77.6 =    PPPPVP  16
REMARK    17 **1 E H  * 131.8 == E KKKKKK  17
REMARK    18 **1 A H  * 159.6 ** E IIIITI  18
REMARK    19 **1 A H  * 134.6 ** E IIIILV  19
REMARK    20 **1 L H  * 128.1 ** E VVVIVV  20
REMARK    21 **1 K H  * 142.7    E SSSPPP  21
REMARK    22 **1 V H ** 167.1 ** E LLLLII  22
REMARK    23 **1 L H ** 117.9 ** E MMMMTV  23
REMARK    24 **1 R H  *  65.5 *    GGAGAA  24
REMARK         :
REMARK    32  *1 L   **  29.6      RRKKKP  25
REMARK    33 **1 G E     66.5    H DDDTTT  26
REMARK    34 **1 L E **  60.9 *  H IIIERA  27
REMARK    35 **1 A E     60.0    H NNAKEE  28
REMARK    36 **1 Y E  *  59.5    H SSSQQD  29
REMARK    37 **1 E E  *  90.5 ** H VVVIAI  30
REMARK    38 **1 V E  *  76.9 *  H KKKLLL  31
REMARK    39 **1 F E  *  77.7 *  H AASNAA  32
REMARK    40 **1 P E  *  78.8 =  H EEEEQE  33
REMARK    41 **1 F   **  98.1 ** H AAAAAA  34
REMARK    42 **1 G    *  71.7 *  H LLLEKT  35
REMARK    43 **1 G H  *  72.7 ** H AAAAVA  36
REMARK    44 **1 A H  *  44.8    H YYYVI   37
REMARK    45  *1 A H  *  25.5    H RRRKAS  38
REMARK    46  *1 I H  *  21.8    H EEELEQ  39
REMARK         :
REMARK    64  *1 A    *  16.1 *  H AAALNT  40
REMARK    65 **1 E    *  28.3    H     KL  41
REMARK    66 **1 A E **  22.6    H TTDNDD  42
REMARK    67 **1 V E **  83.7 *  H FFFPAC  43
REMARK    68 **1 L E **  83.5 == H DDDDDD  44
REMARK    69 **1 L E ** 144.9 ** H IIIIIL  45
REMARK    70 **1 G E  * 103.7 ** H LLLVAV  46
REMARK    71 **1 S E  *  72.0 == H EEEEEE  47
REMARK    72 **1 V E  *  88.2 ** H WWWWFW  48
REMARK    73 **1 G E  *  38.5 == H RRRRRR  49
REMARK    74  *1 G    *  45.5 ** H VVVVIL  50
REMARK    75  *1 P       53.8 == H DDDDDD  51
REMARK    76 **1 K H     78.3    H HHHVLY  52
REMARK    77 **1 W H  *  72.0 **   FFYFLY  53
REMARK         :
REMARK    82  *1 R    *  29.4      MMAEEE  54
REMARK    83  *1 K H     41.9      DDDKFN  55
REMARK    84  *1 I    *  47.4 *  H IILAAV  56
REMARK    85 **1 S    *  45.8    H AASNSA  57
REMARK    86 **1 P    *  42.5    H SSNDDD  58
REMARK    87 **1 E H  *  64.8 *  H TTVRTF  59
REMARK    88  *1 T H  *  77.7    H QQEEKS  60
REMARK    89 **1 G H  * 104.5    H SSSAKD  61
REMARK    90 **1 L H  * 112.8 ** H VVVVVV  62
REMARK    91 **1 L H  *  97.5 *  H LLMTIC  63
REMARK    92 **1 S H    129.8    H TTAKAN  64
REMARK    93 **1 L H ** 124.4 *  H AAALLL  65
REMARK    94 **1 R H  *  73.7 *  H AAAIGS  66
REMARK    95 **1 K H  *  78.4    H RRKSQQ  67
REMARK    96 **1 S H  *  89.5    H VVIKEQ  68
REMARK    97 **1 Q   **  79.8 ** H IILLLV  69
REMARK                 :
REMARK    98 **1 D    *  56.9      DDEDDQ  75
REMARK    99 **1 L E  *  92.5 *    IIKKKK  76
REMARK   100 **1 F E  * 119.4 =  E PPPLPP  77
REMARK   101 **1 A E ** 185.5 ** H LLLFLL  78
REMARK   102 **1 N E ** 199.1 ** H LLLLLL  79
REMARK   103 **1 L E ** 197.1 ** H FFFFAL  80
REMARK   104 **1 R E ** 149.9 ** H TTTTTT  81
REMARK   105 **1 P E  *  97.2 ** H FFFFIF  82
REMARK   106 **1 A E **   1.9 ==   RRRRRR  83
REMARK   107 **1 K E  *   1.8      SSSTTT  84
REMARK   108 **1 V E **   0.0      AAAHSQ  85
REMARK                 :
REMARK   109 **1 F    *   4.1      EEESKE  90
REMARK   110 **1 P    *  69.7 *    QQQMLM  91
REMARK   111 **1 G H     98.3      TTAEKA  92
REMARK   112 **1 L H **  96.8 ** E IIIMVF  93
REMARK                 :
REMARK   113 **1 E H  *   4.9    E QQESQE  96
REMARK   114 **1 R       77.2      HHASEN  97
REMARK   115 **1 L H  *  88.7 **   YYYYYY  98
REMARK   116 **1 S    *  79.8 *    LLILEF  99
REMARK   117 **1 P    *  80.5 *    TTAAKA 100
REMARK   118 **1 L    *  79.2 ** H LLLLIL 101
REMARK   119 **1 K       46.6    H NNNLYY 102
REMARK   120  *1 E    *  58.0    H RRRESH 103
REMARK   121  *1 E H    111.1    H AAASEE 104
REMARK   122 **1 I H  * 126.1 *  H AAAAYL 105
REMARK   123 **1 A H ** 106.3 ** H IIIILV 106
REMARK   124 **1 R    *   2.3      DDDQKK 107
REMARK   125 **1 G    *  52.3      SSSTKK 108
REMARK   126 **1 V E **  77.1      GGGKPG 109
REMARK   127 **1 D E  * 121.6 *  E LLLDFA 110
REMARK   128 **1 V E ** 133.4 ** E VVVIML 111
REMARK   129 **1 L E ** 115.1 =  E DDDDQD 112
REMARK   130 **1 I E ** 150.1 ** E MMMLLL 113
REMARK   131 **1 V E ** 111.0 ** E IIIILL 114
REMARK   132 **1 R E  *  69.2 == H DDDDDD 115
REMARK         :
REMARK   159  *1 K    *  20.8 ** H LLLIII 116
REMARK   160 **1 P H    133.4 == H EEEEEE 117
REMARK   161 **1 E H  * 151.0 ** H LLLLML 118
REMARK   162 **1 V H ** 111.8 ** H FFFFFF 119
REMARK   163 **1 E H  *  61.1    H TTTSRA 120
REMARK   164 **1 R H  *  87.7    H GGGGDN 121
REMARK   165 **1 V H  *  78.3    H DDDDQP 122
REMARK   166 **1 A H ** 126.8 *  H AADAAL 123
REMARK   167 **1 R H  * 124.3    H DDQNAA 124
REMARK   168 **1 V H ** 108.4 ** H VVVVVA 125
REMARK   169 **1 A H  *  44.0    H KKKKAD 126
REMARK   170 **1 F H ** 101.9    H AAEAKT 127
REMARK   171 **1 E H    135.0 *  H TTTLLL 128
REMARK   172 **1 A H ** 132.5 ** H VVVVTI 129
REMARK   173 **1 A H  *  74.4    H DDASKH 130
REMARK   174 **1 R H  *  85.4 *  H YYYLLE 131
REMARK   175  *1 K H  *  58.5 ** H AAAAAA 132
REMARK   176  *1 R   **   0.0    H HHHEHK 133
REMARK   177  *1 R    *   0.0    H AAAEQK 134
REMARK   178  *1 K    *  94.7    H HHHNKA 135
REMARK   179 **1 H E  * 130.4    H NNDNKG 136
REMARK   180 **1 V E ** 185.5 ** E VVVVVI 137
REMARK   181 **1 V E ** 181.8    E YYKYLK 138
REMARK   182 **1 S E ** 199.3 ** E VVVVVI 139
REMARK   183 **1 V E **  66.7 ** E VVVVVV 140
REMARK   184 **1 D E **  36.4 ** E MMMMML 141
REMARK         :
REMARK   192  *1 G H  *  22.7 =    SSSSSC 142
REMARK   193  *1 E H  *  19.4 ==   NNNNNN 143
REMARK   194 **1 F H     40.3 ==   HHHHHH 144
REMARK   195 **1 W H  *  33.6 ==   DDDDDD 145
REMARK   196 **1 R H  *  45.7 **   FFFFFF 146
REMARK   197 **1 K H     40.5      HHHEDQ 147
REMARK   198 **1 T H  *  41.3 =    QQKKKK 148
REMARK   199 **1 V H  *  42.6 **   TTTTTT 149
REMARK   200 **1 E H  *  21.3 ==   PPPPPP 150
REMARK         :
REMARK   208 **1 D       26.8      SSEVSS 151
REMARK   209 **1 V    *   0.0    H AAAKEQ 152
REMARK   210 **1 A E  *  69.2    H EEEDQE 153
REMARK   211 **1 L E **  79.9 == H EEEEEE 154
REMARK   212 **1 E E  * 116.2 ** H MMIIII 155
REMARK   213 **1 H E  *  86.4 ** H VVIIVV 156
REMARK   214 **1 Q E  *  72.8 =  H SSASSA 157
REMARK   215 **1 Y    *  63.9 == H RRRRRR 158
REMARK   216 **1 V    *  80.0 ** H LLLLLL 159
REMARK   217 **1 D H    116.3 =  H RRRRLR 160
REMARK   218 **1 A H    148.2 =  H KKKKKQ 161
REMARK   219 **1 M H ** 129.7 ** H MMMMQM 162
REMARK   220 **1 A H  *  63.7 =  H QQQQDQ 163
REMARK   221 **1 M H     90.5    E AASDQM 164
REMARK   222 **1 H H  *  92.6 *  H LLFLMR 165
REMARK   223 **1 L H **  64.4    H GGDGGQ 166
REMARK   224 **1 V H  *  74.8 ** H AAAAAA 167
REMARK         :
REMARK   226 **1 S    *  76.0 =    DDDHDD 168
REMARK   227 **1 P   **  99.2 **   IIIIII 169
REMARK   228 **1 A    *  72.9    H PPPPLC 170
REMARK   229 **1 R      128.4 == E KKKKKK 171
REMARK   230 **1 F   ** 181.6 ** E IIIMII 172
REMARK   231 **1 D E  * 201.5 ** E AAAAAA 173
REMARK   232 **1 V E ** 191.1 ** E VVLVVV 174
REMARK   233 **1 V E ** 140.4 ** E MMMMMM 175
REMARK   234 **1 V E **  13.0 ==   PPPPPP 176
REMARK   235 **1 T E  *  28.6      QQQNKQ 177
REMARK   236 **1 G   **   0.0 =    SSSDSD 178
REMARK   237 **1 N    *   0.0      KKTTKA 179
REMARK   238  *1 I H  *  83.2      HHSGQT 180
REMARK   239 **1 F H  * 120.8 == E DDDDDD 181
REMARK   240 **1 G H  * 127.2 ** E VVVLVV 182
REMARK   241 **1 D H  * 122.6 ** E LLLLFL 183
REMARK   242 **1 I H    174.1 ** E TTTTTT 184
REMARK   243 **1 L H ** 185.2 ** H LLLLLL 185
REMARK   244 **1 S H  * 128.4 ** H LLLLML 186
REMARK   245 **1 D H    148.6    H TTADNS 187
REMARK   246 **1 L H  * 180.1 ** H AAAAAA 188
REMARK   247 **1 A H ** 169.6 ** H TTTTTT 189
REMARK   248 **1 S H ** 139.8 *  H LLLYLN 190
REMARK   249 **1 V H  *  97.0    H EEETKE 191
REMARK   250 **1 L H **  94.1 ** H MMMMVM 192
REMARK                 :
REMARK   251 **1 P   **  42.9      HHQIQH 195
REMARK   252 **1 G    *  87.5 *    YYYY Y 196
REMARK   253 **1 S   **  85.5 *    AAAASA 197
REMARK   254 **1 L    *   5.8      DDDDTS 198
REMARK   255 **1 G   **  58.4      RRRRKV 199
REMARK   256 **1 L   **  72.2 ==   PPPPPP 200
REMARK   257 **1 L E ** 185.6 **   VVIILI 201
REMARK   258 **1 P E  * 196.0 ** E IIIILV 202
REMARK   259 **1 S E  * 177.9 ** E TTTTTT 203
REMARK   260 **1 A E ** 165.1 ** E MMMMMM 204
REMARK   261 **1 S E **  98.8 == E SSSSSS 205
REMARK   262 **1 L E ** 125.7 ** H MMMMMM 206
REMARK   263 **1 G    *  66.0 *  H AAAAGG 207
REMARK   264  *1 R       53.9    H KKKARQ 208
REMARK   265  *1 G    *  78.1    H EETTLL 209
REMARK   266 **1 T    * 148.2 *= H GGGGGG 210
REMARK   267 **1 P E  * 181.1 ** E VVVLTM 211
REMARK   268 **1 V E ** 134.8 ** E IIIIII 212
REMARK   269 **1 F E  *  53.8 == E SSSSSS 213
REMARK   270 **1 E E  *  69.6 == E RRRRRR 214
REMARK   271 **1 P E  *  48.9 ** E LLLLIV 215
REMARK   272  *1 V E  *  21.7 *    AAASAT 216
REMARK         :
REMARK   283  *1 G    *  50.8 *    GGGGTG 217
REMARK   284 **1 I    *  66.3      EEEEAQ 218
REMARK   285 **1 A E  * 114.9 **   VVVVNL 219
REMARK   286 **1 N E ** 100.2 **   FFFFMF 220
REMARK   287 **1 P    *  72.0 *=   GGGGGG 221
REMARK   288 **1 T   **  55.0 =    SSSSGS 222
REMARK   289 **1 A H  * 124.3 *    AAAASA 223
REMARK   290 **1 A H ** 155.6 *    AAACLL 224
REMARK   291 **1 I H ** 174.2 *  H TTTTST 225
REMARK   292 **1 L H ** 172.1 ** H FFFFFF 226
REMARK   293 **1 S H  * 142.3 *= H GGGGGG 227
REMARK   294 **1 A H  * 142.9 *  H AAAAMS 228
REMARK   295 **1 A H ** 107.0 *    VVVGIA 229
REMARK   296 **1 M H **  51.6      KKKEGQ 230
REMARK   297 **1 M H  *  89.6      QQKEEQ 231
REMARK   298 **1 L H ** 130.2 **   AAAAAA 232
REMARK   299 **1 E H  *  97.0 ==   SSSSSS 233
REMARK   300 **1 H H ** 103.3 **   AAAAAA 234
REMARK   301 **1 A    *  15.7 ==   PPPPPP 235
REMARK   302  *1 F    *  29.2 *=   GGGGGG 236
REMARK         :
REMARK   305  *1 V    *   0.1 == E QQQQQQ 237
REMARK   306  *1 E H     37.3 ** E IIIIIL 238
REMARK   307 **1 L H  *  62.9    E AASPDS 239
REMARK   308 **1 A H  *  64.0 ** E VVVVVV 240
REMARK   309 **1 R H  *  59.8    E NNNSTQ 241
REMARK   310 **1 K H  *  92.9    E DDDEAV 242
REMARK   311 **1 V H **  92.1 **   LLLLLL 243
REMARK   312 **1 E H  *  33.9 =    RRRRKR 244
REMARK   313 **1 D H  *  93.4    H SSTSQN 245
REMARK   314 **1 A H  * 101.7 ** E VVVVFY 246
REMARK   315 **1 V H **  83.3 ** E LLLLLL 247
REMARK   316 **1 A H  *  71.9    E MMTDKK 248
REMARK   317 **1 K H  *  52.2 ** E IIIITT 249
REMARK   318 **1 A H  *  37.4 ** E LLLLVF 250
REMARK   319 **1 L H **   0.0      HHHHQE 251
REMARK   320 **1 L H  *   3.0      NNQKPQ 252
REMARK   321  *1 E H      4.3      AAANTN 253
REMARK  
REMARK  Alignment of domain 1 retained (score = 21066.169922)
REMARK   score = 21066.169922
REMARK
REMARK
REMARK
REMARK ========================================================================
REMARK  
REMARK  THREADING ON 1TRE
REMARK
REMARK  
REMARK       ..p- USER>>T0014;
REMARK       p-b- USER>>P1;AROD_SALTI
REMARK       b-p- USER>>P1;AROD_ECOLI
REMARK       ..b- USER>>P1ROD_BACSU
REMARK  637
REMARK       p--- USER>>P1;ACU20284
REMARK       b--- USER>>P1;EBSD_ENTFA
REMARK  
REMARK  
REMARK  block 0 = 6 seqs
REMARK  *USER>>T0014; : 3-Dehydroquinase from Salmonella typhimurium (252a.a.)
REMARK  *USER>>P1;AROD_SALTI :  3-DEHYDROQUINATE DEHYDRATASE (EC 4.2.1.10) (3-DEHYDROQUINASE). - SALMONELLA TYPHI.
REMARK  *USER>>P1;AROD_ECOLI :  3-DEHYDROQUINATE DEHYDRATASE (EC 4.2.1.10) (3-DEHYDROQUINASE). - ESCHERICHIA COLI.
REMARK  *USER>>P1ROD_BACSU :    3-DEHYDROQUINATE DEHYDRATASE (EC 4.2.1.10) (3-DEHYDROQUINASE). - BACILLUS SUBTILIS.
REMARK  *USER>>P1;ACU20284 :    ACU20284 NCBI gi: 644873 - Acinetobacter calcoaceticus
REMARK  *USER>>P1;EBSD_ENTFA :  PROBABLE 3-DEHYDROQUINATE DEHYDRATASE (EC 4.2.1.10) (3-DEHYDROQUINASE). - ENTEROCOCCUS FAECALIS (ST
REMARK  
REMARK  MKTVTVKNLIIGEGMPKIIVSLMGRDINSVKAEALAYREA TFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDIPLLF
REMARK  MKTVTVKNLIIGEGMPKIIVSLMGRDINSVKAEALAYREA TFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDIPLLF
REMARK  MKTVTVKDLVIGTGAPKIIVSLMAKDIASVKSEALAYREA DFDILEWRVDHYADLSNVESVMAAAKILRETMPEKPLLF
REMARK  MNVLTIKGVSIGEGMPKIIIPLMGKTEKQILNEAEAVKLL NPDIVEWRVDVFEKANDREAVTKLISKLRKSLEDKLFLF
REMARK  KSTYVVKNLNIGDLPVKTLVPITAKTREQALAQAKVIAENKDADIAEFRIDLLEFASDTKKVIALGQELNQILKDKPLLA
REMARK  MKPVIVKNVRIGEGNPKIVVPIVAPTAEDILAEATA SQTLDCDLVEWRLDYYENVADFSDVCNLSQQVMERLGQKPLLL
REMARK  
REMARK  TFRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVSRLR
REMARK  TFRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVSRLR
REMARK  TFRSAKEGGEQAISTEAYIALNRAAIDSGLVDMIDLELFTGDDQVKETVAYAHAHDVKVVMSNHDFHKTPEAEEIIARLR
REMARK  TFRTHKEGGSMEMDESSYLALLESAIQTKDIDLIDIELFSGDANVKALVSLAEENNVYVVMSNHDFEKTPVKDEIISRLR
REMARK  TIRTSNEGGKLKVTDQEYEKIYSEYLKKPFMQLLDIEMFRDQAAVAKLTKLAHQKKVLVVMSNHDFDKTPSEQEIVSRLL
REMARK  TFRTQKEGGEMAFSEENYFALYHELVKKGALDLLDIELFANPLAADTLIHEAKKAGIKIVLCNHDFQKTPSQEEIVARLR
REMARK  
REMARK  KMQALGADIPKIAVMPQSKHDVLTLLTATLEMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQASAPGQIAV
REMARK  KMQALGADIPKIAVMPQSKHDVLTLLTATLEMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQASAPGQIAV
REMARK  KMQSFDADIPKIALMPQSTSDVLTLLAATLEMQEQYADRPIITMSMAKTGVISRLAGEVFGSAATFGAVKKASAPGQISV
REMARK  KMQDLGAHIPKMAVMPNDTGDLLTLLDATYTMKTIYADRPIITMSMAATGLISRLSGEVFGSACTFGAGEEASAPGQIPV
REMARK  KQDQMGADILKIAVMPKSKQDVFTLMNATLKVSEQ STKPLLTMSMGRLGTISRIATANMGGSLSFGMIGEASAPGQIDV
REMARK  QMQMRQADICKIAVMPQDATDVLTLLSATNEMYTHYASVPIVTMSMGQLGMISRVTGQLFGSALTFGSAQQASAPGQLSV
REMARK  
REMARK  NDLRSVLMILHNA   
REMARK  NDLRSVLMILHNA   
REMARK  NDLRTVLTILHQA   
REMARK  SELRSVLDILHKNTRG
REMARK  TALKQFLKTVQPTP  
REMARK  QVLRNYLKTFEQNK  
REMARK  
REMARK  
REMARK  2 groups ( 1 aligned )
REMARK  
REMARK  
REMARK  
REMARK  Comparing structure [ 1TRE ] with profile [ >T0014; >P1;AROD_SALTI >P1;AROD_ECOLI >P1ROD_BACSU >P1;ACU20284 >P1;EBSD_ENTFA ]
REMARK   GAPS_wt = 3.000000 PAIR_wt = 0.300000 SECS_wt = 0.500000 PHOB_wt = 0.500000
REMARK   npairs = 2249
REMARK   npairs = 373
REMARK  Domain 1 length = 254 --- threading
REMARK   lena = 254 lenb = 256
REMARK  Observed beta  = 0.228, observed alpha  = 0.469
REMARK   n = 42
REMARK  Predicted beta = 0.227, predicted alpha = 0.473
REMARK   sumss = 5.000000 sssum = 0.000000 ss_wt = 0.000000
REMARK   sumco = 150.613480 cosum = 152.712921 co_wt = 1.013939
REMARK   sumpk = 7251.816895 pksum = 6666.757812 pk_wt = 0.919322
REMARK  Percent sel on aln =  100.00
REMARK  Percent aln in sel =   43.67
REMARK  
REMARK  structure             sequence
REMARK  
REMARK     1 **1 M E     75.2 ** H MMMMKM   1
REMARK     2 **1 R E **  87.1    E KKKNSK   2
REMARK     3 **1 H E  * 158.8 *  E TTTVTP   3
REMARK     4 **1 P E ** 200.6 ** E VVVLYV   4
REMARK     5 **1 L E ** 183.5 *  E TTTTVI   5
REMARK     6 **1 V E ** 138.8 ** E VVVIVV   6
REMARK     7 **1 M E ** 105.1 == E KKKKKK   7
REMARK     8 **1 G E  * 120.7    E NNDGNN   8
REMARK     9 **1 N E ** 148.3 ** E LLLVLV   9
REMARK    10 **1 W   **  86.5    E IIVSNR  10
REMARK    11 **1 K   **  96.2 ** E IIIIII  11
REMARK    12 **1 L       66.4 *=   GGGGGG  12
REMARK    13 **1 N    *  62.8      EETEDE  13
REMARK    14 **1 G E **  77.5 *    GGGGLG  14
REMARK    15 **1 S       49.0 *    MMAMPN  15
REMARK    16  *1 R    *  64.4 =    PPPPVP  16
REMARK    17  *1 H H    107.6 == E KKKKKK  17
REMARK    18 **1 M H  * 134.9 ** E IIIITI  18
REMARK    19 **1 V H  * 118.9 ** E IIIILV  19
REMARK    20 **1 H H  *  99.0 ** E VVVIVV  20
REMARK    21 **1 E H    122.3    E SSSPPP  21
REMARK    22 **1 L H  * 135.2 ** E LLLLII  22
REMARK                 :
REMARK    23 **1 V H  *  67.2 *  H IIIERA  27
REMARK    24 **1 S H  *  93.9    H NNAKEE  28
REMARK    25 **1 N H    136.7    H SSSQQD  29
REMARK    26 **1 L H ** 136.4 ** H VVVIAI  30
REMARK    27 **1 R H  *  80.7 *  H KKKLLL  31
REMARK    28  *1 K H     90.5 *  H AASNAA  32
REMARK    29 **1 E H  * 107.1 =  H EEEEQE  33
REMARK    30 **1 L H ** 109.9 ** H AAAAAA  34
REMARK                 :
REMARK    31 **1 A    *  78.7 ** H LLLVAV  46
REMARK    32 **1 G       91.0 == H EEEEEE  47
REMARK    33 **1 V   ** 103.7 ** H WWWWFW  48
REMARK    34 **1 A       67.8 == H RRRRRR  49
REMARK    35 **1 G    *  68.5 ** H VVVVIL  50
REMARK    36 **1 C   **  39.7 == H DDDDDD  51
REMARK    37 **1 A E  * 107.5    H HHHVLY  52
REMARK    38 **1 V E ** 102.5 ** H FFYFLY  53
REMARK    39 **1 A E **  73.3      MMAEEE  54
REMARK    40 **1 I E **  50.3    H DDDKFN  55
REMARK    41 **1 A E  *  77.6 *  H IILAAV  56
REMARK    42 **1 P E **  33.2    H AASNSA  57
REMARK    43 **1 P    *  21.6    H SSNDDD  58
REMARK                 :
REMARK    44 **1 E    *  48.3    H QQEEKS  60
REMARK    45 **1 M H    129.8    H SSSAKD  61
REMARK    46 **1 Y H ** 125.3 ** H VVVVVV  62
REMARK    47 **1 I H  *  93.6 *  H LLMTIC  63
REMARK    48 **1 D H  * 117.3    H TTAKAN  64
REMARK    49 **1 M H  * 114.3 *  H AAALLL  65
REMARK    50 **1 A H  *  75.7 *  H AAAIGS  66
REMARK    51 **1 K H  *  72.8    H RRKSQQ  67
REMARK    52  *1 R H  *  82.0    H VVIKEQ  68
REMARK    53 **1 E H  *  63.9 ** H IILLLV  69
REMARK                 :
REMARK    54 **1 A H  *  15.2 **   MMMLLL  73
REMARK    55 **1 E    *  37.0      PPPEKG  74
REMARK    56  *1 G       55.4      DDEDDQ  75
REMARK    57  *1 S    *  93.2 *    IIKKKK  76
REMARK    58 **1 H    * 138.2 =  H PPPLPP  77
REMARK    59 **1 I E ** 184.4 ** H LLLFLL  78
REMARK    60 **1 M E  * 165.5 ** H LLLLLL  79
REMARK    61 **1 L E  * 176.4 ** H FFFFAL  80
REMARK    62 **1 G E  * 163.1 ** H TTTTTT  81
REMARK    63 **1 A E ** 120.0 ** H FFFFIF  82
REMARK    64 **1 Q E **   0.6 ==   RRRRRR  83
REMARK    65 **1 N E  *  24.4      SSSTTT  84
REMARK    66 **1 V E **   0.0      AAAHSQ  85
REMARK    67 **1 N E  *  21.1 =    KKKKNK  86
REMARK    68  *1 L E  *  16.3 ==   EEEEEE  87
REMARK    69  *1 N    *  25.7 *=   GGGGGG  88
REMARK    70  *1 L    *  20.6 *=   GGGGGG  89
REMARK    71  *1 S    *   0.0      EEESKE  90
REMARK    72  *1 G       20.4 *    QQQMLM  91
REMARK    73  *1 A       28.3    H TTAEKA  92
REMARK    74  *1 F    *  25.2 ** H IIIMVF  93
REMARK                 :
REMARK    75  *1 T       66.7    E QQESQE  96
REMARK    76  *1 G       95.4      HHASEN  97
REMARK    77 **1 E    * 114.8 **   YYYYYY  98
REMARK    78 **1 T E  * 116.2 *    LLILEF  99
REMARK    79 **1 S    * 106.0 *  H TTAAKA 100
REMARK    80 **1 A   ** 106.0 ** H LLLLIL 101
REMARK    81 **1 A H  *  55.2    H NNNLYY 102
REMARK    82 **1 M H  *  77.0    H RRRESH 103
REMARK    83 **1 L H **  88.9    H AAASEE 104
REMARK    84 **1 K H  *  84.4 *  H AAAAYL 105
REMARK    85 **1 D H     56.6 ** H IIIILV 106
REMARK    86  *1 I    *   0.0      DDDQKK 107
REMARK    87 **1 G       62.0      SSSTKK 108
REMARK    88 **1 A    *  80.3      GGGKPG 109
REMARK    89 **1 Q E  * 125.0 *  E LLLDFA 110
REMARK    90 **1 Y E ** 148.3 ** E VVVIML 111
REMARK    91 **1 I E ** 110.2 =  H DDDDQD 112
REMARK    92 **1 I E ** 185.7 ** E MMMLLL 113
REMARK    93 **1 I E ** 140.5 ** H IIIILL 114
REMARK    94 **1 G   **  52.4 == H DDDDDD 115
REMARK    95 **1 H   ** 103.5 ** H LLLIII 116
REMARK    96 **1 S    *  54.4 == H EEEEEE 117
REMARK    97 **1 E H  *  86.7 ** H LLLLML 118
REMARK    98  *1 R H  *  61.6 ** H FFFFFF 119
REMARK    99  *1 R H  *  48.8    H TTTSRA 120
REMARK         :
REMARK   105 **1 S       20.3    H GGGGDN 121
REMARK   106  *1 D    *   0.0    H DDDDQP 122
REMARK   107  *1 E H     76.9 *  H AADAAL 123
REMARK   108 **1 L H  * 104.5    H DDQNAA 124
REMARK   109 **1 I H  *  95.3 ** H VVVVVA 125
REMARK   110 **1 A H  *  89.8    H KKKKAD 126
REMARK   111 **1 K H    149.1    H AAEAKT 127
REMARK   112 **1 K H  * 155.5 *  H TTTLLL 128
REMARK   113 **1 F H ** 130.8 ** H VVVVTI 129
REMARK   114 **1 A H  * 111.7    H DDASKH 130
REMARK   115 **1 V H  * 134.7 *  H YYYLLE 131
REMARK   116 **1 L H ** 114.0 ** H AAAAAA 132
REMARK   117 **1 K H  *  49.4    H HHHEHK 133
REMARK   118 **1 E H     72.5    H AAAEQK 134
REMARK   119  *1 Q    *  59.5    H HHHNKA 135
REMARK   120 **1 G       88.4    H NNDNKG 136
REMARK   121 **1 L   ** 123.1 ** E VVVVVI 137
REMARK   122 **1 T E  * 156.5    E YYKYLK 138
REMARK   123 **1 P E ** 199.6 ** E VVVVVI 139
REMARK   124 **1 V E ** 165.3 ** E VVVVVV 140
REMARK   125 **1 L E ** 102.3 ** E MMMMML 141
REMARK   126 **1 C E  *  22.8 =    SSSSSC 142
REMARK   127 **1 I E **   0.4 ==   NNNNNN 143
REMARK   128 **1 G E  *  36.4 ==   HHHHHH 144
REMARK         :
REMARK   130  *1 T    *  27.1 ==   DDDDDD 145
REMARK   131  *1 E    *  33.5 **   FFFFFF 146
REMARK   132  *1 A H     36.1      HHHEDQ 147
REMARK   133  *1 E H  *  34.9 =    QQKKKK 148
REMARK   134  *1 N H  *  36.6 **   TTTTTT 149
REMARK         :
REMARK   138 **1 K    *   0.0 ==   PPPPPP 150
REMARK   139 **1 T H  *   0.0      SSEVSS 151
REMARK   140 **1 E H  *  57.2    H AAAKEQ 152
REMARK   141 **1 E H    102.2    H EEEDQE 153
REMARK   142 **1 V H  * 128.7 == H EEEEEE 154
REMARK   143 **1 C H ** 150.2 ** H MMIIII 155
REMARK   144 **1 A H  *  91.7 ** H VVIIVV 156
REMARK   145 **1 R H    104.3 =  H SSASSA 157
REMARK   146 **1 Q H  * 105.3 == H RRRRRR 158
REMARK   147 **1 I H ** 110.6 ** H LLLLLL 159
REMARK   148 **1 D H     87.1 =  H RRRRLR 160
REMARK   149 **1 A H  *  92.2 =  H KKKKKQ 161
REMARK   150 **1 V H **  81.8 ** H MMMMQM 162
REMARK         :
REMARK   154  *1 Q    *  27.9 =  H QQQQDQ 163
REMARK   155 **1 G       47.2    E AASDQM 164
REMARK   156 **1 A    *  71.5 *  H LLFLMR 165
REMARK   157 **1 A H  *  89.6    H GGDGGQ 166
REMARK   158 **1 A H **  95.8 ** H AAAAAA 167
REMARK   159 **1 F H **  33.6 =  H DDDHDD 168
REMARK   160 **1 E H  *  63.6 **   IIIIII 169
REMARK   161 **1 G    *  69.4    H PPPPLC 170
REMARK   162 **1 A    * 120.4 == E KKKKKK 171
REMARK   163 **1 V E ** 170.4 ** E IIIMII 172
REMARK   164 **1 I E ** 161.8 ** E AAAAAA 173
REMARK   165 **1 A E  * 126.9 ** E VVLVVV 174
REMARK   166 **1 Y E **  83.3 ** E MMMMMM 175
REMARK         :
REMARK   179 **1 T        6.4 ==   PPPPPP 176
REMARK                 :
REMARK   180 **1 P    *   0.0 =    SSSDSD 178
REMARK   181 **1 A H     40.6      KKTTKA 179
REMARK   182 **1 Q H  *  62.3      HHSGQT 180
REMARK   183 **1 A H **  57.2 == E DDDDDD 181
REMARK   184 **1 Q H  * 120.2 ** E VVVLVV 182
REMARK   185 **1 A H    148.7 ** E LLLLFL 183
REMARK   186 **1 V H ** 183.4 ** E TTTTTT 184
REMARK   187 **1 H H ** 148.7 ** H LLLLLL 185
REMARK   188 **1 K H  * 119.8 ** H LLLLML 186
REMARK   189 **1 F H  * 166.4    H TTADNS 187
REMARK   190 **1 I H ** 188.9 ** H AAAAAA 188
REMARK   191 **1 R H ** 141.5 ** H TTTTTT 189
REMARK   192 **1 D H    114.1 *  H LLLYLN 190
REMARK   193 **1 H H  * 128.8    H EEETKE 191
REMARK   194 **1 I H ** 121.6 ** H MMMMVM 192
REMARK   195 **1 A H  *  55.8    H QQQKSY 193
REMARK   196  *1 K H     62.8    H QQETET 194
REMARK   197  *1 V H     64.5      HHQIQH 195
REMARK   198  *1 D    *  64.4 *    YYYY Y 196
REMARK   199  *1 A H  *  64.5 *    AAAASA 197
REMARK   200  *1 N H     56.9      DDDDTS 198
REMARK   201 **1 I H  *  85.1      RRRRKV 199
REMARK   202 **1 A H  *  90.0 ==   PPPPPP 200
REMARK   203 **1 E H ** 140.8 **   VVIILI 201
REMARK   204 **1 Q    * 142.7 ** E IIIILV 202
REMARK   205 **1 V   ** 152.4 ** E TTTTTT 203
REMARK   206 **1 I E ** 139.2 ** E MMMMMM 204
REMARK   207 **1 I E **  95.0 == H SSSSSS 205
REMARK   208 **1 Q E  * 137.6 ** H MMMMMM 206
REMARK   209 **1 Y E **  96.4 *  H AAAAGG 207
REMARK   210 **1 G   **  18.4    H KKKARQ 208
REMARK   211 **1 G    *  74.2    H EETTLL 209
REMARK   212 **1 S    * 105.3 *= H GGGGGG 210
REMARK   213 **1 V E  * 104.0 ** E VVVLTM 211
REMARK   214 **1 N    *  62.7 ** E IIIIII 212
REMARK   215  *1 A    *  57.8 == E SSSSSS 213
REMARK   216  *1 S H    100.5 == E RRRRRR 214
REMARK   217 **1 N H  * 113.5 ** E LLLLIV 215
REMARK   218 **1 A H  *  93.7 *    AAASAT 216
REMARK   219 **1 A H  *  88.0 *    GGGGTG 217
REMARK   220 **1 E H    122.9      EEEEAQ 218
REMARK   221 **1 L H ** 125.0 **   VVVVNL 219
REMARK   222 **1 F H  *  79.3 **   FFFFMF 220
REMARK         :
REMARK   224 **1 Q    *  58.7 *=   GGGGGG 221
REMARK   225 **1 P    *  68.9 =    SSSSGS 222
REMARK   226 **1 D   ** 107.8 *    AAAASA 223
REMARK   227 **1 I   ** 113.3 *    AAACLL 224
REMARK   228 **1 D E  * 132.5 *  H TTTTST 225
REMARK   229 **1 G E  * 144.1 ** H FFFFFF 226
REMARK   230 **1 A E ** 150.0 *= H GGGGGG 227
REMARK   231 **1 L E ** 147.8 *  H AAAAMS 228
REMARK   232 **1 V   ** 103.2 *    VVVGIA 229
REMARK   233 **1 G    *  46.7      KKKEGQ 230
REMARK   234  *1 G       92.0      QQKEEQ 231
REMARK   235 **1 A H  * 115.5 **   AAAAAA 232
REMARK   236 **1 S H  *  92.6 ==   SSSSSS 233
REMARK   237 **1 L H ** 105.4 **   AAAAAA 234
REMARK   238 **1 K       58.0 ==   PPPPPP 235
REMARK   239 **1 A    *  68.7 *=   GGGGGG 236
REMARK   240 **1 D H  *  73.6 == E QQQQQQ 237
REMARK   241  *1 A H  * 101.0 ** E IIIIIL 238
REMARK   242 **1 F H  * 105.6    E AASPDS 239
REMARK   243 **1 A H ** 113.2 ** E VVVVVV 240
REMARK   244 **1 V H  *  98.3    E NNNSTQ 241
REMARK   245 **1 I H  * 120.0    E DDDEAV 242
REMARK   246 **1 V H ** 121.1 **   LLLLLL 243
REMARK   247 **1 K H  *  88.7 =    RRRRKR 244
REMARK   248 **1 A H  * 132.0    H SSTSQN 245
REMARK   249 **1 A H  * 135.4 ** E VVVVFY 246
REMARK   250 **1 E H  * 116.7 ** E LLLLLL 247
REMARK   251 **1 A H    107.4    E MMTDKK 248
REMARK   252 **1 A H  *  94.0 ** E IIIITT 249
REMARK   253 **1 K H  * 103.7 ** E LLLLVF 250
REMARK   254 **1 Q       60.3      HHHHQE 251
REMARK  
REMARK  
REMARK  Alignment of domain 1 retained (score = 20819.003906)
REMARK   score = 20819.003906
REMARK  
REMARK        
REMARK ========================================================================
REMARK Threading for target sequence T0014 showing aligned segments of 1IPD
REMARK
REMARK          5        10        15        20        25        30        35        40
REMARK  M K T V T V K N L I I G E G M P K I I V S L M G R D I N S V K A E A L A Y R E A         
REMARK  1--------------------------------------------2432--------------------------4664 
REMARK
REMARK         45        50        55        60        65        70        75        80
REMARK  T F D I L E W R V D H F M D I A S T Q S V L T A A R V I R D A M P D I P L L F T 
REMARK  66-------------------7782----------------------------97          98------------
REMARK
REMARK         85        90        95       100       105       110       115       120
REMARK  F R S A K E G G E Q T I T T Q H Y L T L N R A A I D S G L V D M I D L E L F T G
REMARK  -----08        09----12    13------------------------------------3259----------
REMARK
REMARK        125       130       135       140       145       150       155       160
REMARK  D A D V K A T V D Y A H A H N V Y V V M S N H D F H Q T P S A E E M V S R L R K
REMARK  -------------------------------------8492--------------0008--------------------
REMARK
REMARK        165       170       175       180       185       190       195       200
REMARK  M Q A L G A D I P K I A V M P Q S K H D V L T L L T A T L E M Q Q H Y A D R P V 
REMARK  ---------2426----------------------------------------------50     51-----------
REMARK
REMARK        205       210       215       220       225       230       235       240
REMARK  I T M S M A K E G V I S R L A G E V F G S A A T F G A V K Q A S A P G Q I A V N
REMARK  ---------------------------7283------------------------------------0205--------
REMARK
REMARK        245       250      
REMARK  D L R S V L M I L H N A *
REMARK  ---------------------21
REMARK
REMARK Threading for target sequence T0014 showing aligned segments of 1TRE
REMARK Threaded structure residue numbers are +2 to correspond with pdb.
REMARK Also note that there are two residues with pdb number 255 in the copy of 1TRE
REMARK and so the final threaded structre ends in ---56 to represent 256, the second
REMARK residue with number 255.
REMARK
REMARK          5        10        15        20        25        30        35        40
REMARK  M K T V T V K N L I I G E G M P K I I V S L M G R D I N S V K A E A L A Y R E A         
REMARK  3----------------------------------------24        25------------32             
REMARK
REMARK         45        50        55        60        65        70        75        80
REMARK  T F D I L E W R V D H F M D I A S T Q S V L T A A R V I R D A M P D I P L L F T 
REMARK         33----------------------45  46----------------55      56----------------
REMARK
REMARK         85        90        95       100       105       110       115       120
REMARK  F R S A K E G G E Q T I T T Q H Y L T L N R A A I D S G L V D M I D L E L F T G
REMARK  ---------------------76    77----------------------------------------------0107
REMARK
REMARK        125       130       135       140       145       150       155       160
REMARK  D A D V K A T V D Y A H A H N V Y V V M S N H D F H Q T P S A E E M V S R L R K
REMARK  -------------------------------------------3032------3640----------------------
REMARK
REMARK        165       170       175       180       185       190       195       200
REMARK  M Q A L G A D I P K I A V M P Q S K H D V L T L L T A T L E M Q Q H Y A D R P V 
REMARK 5256----------------------6881  82----------------------------------------------
REMARK
REMARK        205       210       215       220       225       230       235       240
REMARK  I T M S M A K E G V I S R L A G E V F G S A A T F G A V K Q A S A P G Q I A V N
REMARK  -----------------------------------2426----------------------------------------
REMARK
REMARK        245       250      
REMARK  D L R S V L M I L H N A *
REMARK  -----------------56
REMARK
REMARK 
REMARK ========================================================================
TSCORE T0014 0  0.6     1IPD - 0
TSCORE T0014 0  0.4     1TRE A 0
REMARK ========================================================================
TALIGN T0014 0    1   24        1IPD - 0          1   24        1.0     1
TALIGN T0014 0   25   39        1IPD - 0         32   46        1.0     1
TALIGN T0014 0   40   40        1IPD - 0         64   64        1.0     1
TALIGN T0014 0   41   52        1IPD - 0         66   77        1.0     1
TALIGN T0014 0   53   68        1IPD - 0         82   97        1.0     1
TALIGN T0014 0   74   84        1IPD - 0         98  108        1.0     1
TALIGN T0014 0   89   92        1IPD - 0        109  112        1.0     1
TALIGN T0014 0   95  114        1IPD - 0        113  132        1.0     1
TALIGN T0014 0  115  140        1IPD - 0        159  184        1.0     1
TALIGN T0014 0  141  149        1IPD - 0        192  200        1.0     1
TALIGN T0014 0  150  166        1IPD - 0        208  224        1.0     1
TALIGN T0014 0  167  191        1IPD - 0        226  250        1.0     1
TALIGN T0014 0  194  215        1IPD - 0        251  272        1.0     1
TALIGN T0014 0  216  235        1IPD - 0        283  302        1.0     1
TALIGN T0014 0  236  252        1IPD - 0        305  321        1.0     1
TALIGN T0014 0    1   22        1TRE A 0          3   24        1.0     1
TALIGN T0014 0   27   34        1TRE A 0         25   32        1.0     1
TALIGN T0014 0   45   57        1TRE A 0         33   45        1.0     1
TALIGN T0014 0   59   68        1TRE A 0         46   55        1.0     1
TALIGN T0014 0   72   92        1TRE A 0         56   76        1.0     1
TALIGN T0014 0   95  119        1TRE A 0         77  101        1.0     1
TALIGN T0014 0  120  143        1TRE A 0        107  130        1.0     1
TALIGN T0014 0  144  148        1TRE A 0        132  136        1.0     1
TALIGN T0014 0  149  161        1TRE A 0        140  152        1.0     1
TALIGN T0014 0  162  174        1TRE A 0        156  168        1.0     1
TALIGN T0014 0  175  175        1TRE A 0        181  181        1.0     1
TALIGN T0014 0  177  219        1TRE A 0        182  224        1.0     1
TALIGN T0014 0  220  250        1TRE A 0        226  255        1.0     1
REMARK ========================================================================

