


PFRMAT FRV1
REMARK ======================================================================
REMARK PROPSEARCH VERSION 1.0 RESULTS.
REMARK REFERENCE: HOBOHM & SANDER JMB 251(95)390-399
REMARK A PROPSEARCH DATABASE SEARCH WAS PERFORMED AGAINST THE ENTIRE PDB 
REMARK RELEASE AUGUST 1996 (7926 CHAINS) USING THE FRAGMENT SEARCH OPTION 
REMARK OF PROPSEARCH.
REMARK A WWW SERVER FOR PROPSEARCH IS AVAILABLE UNDER
REMARK http://www.embl-heidelberg.de/prs.html
REMARK THE PROPSEARCH DISTANCE CAN BE REGARDED AS A RELIABILITY BETWEEN 0 AND
REMARK 99.9% FOR STRUCTURAL SIMILARITY, WHERE DIFFERENT HITS CAN OBTAIN 
REMARK SIMILAR RELIABILITY. THIS SCALE IS NOT ADEQUATELY TRANSFORMED INTO A 
REMARK SCALE BETWEEN 0 AND 1, WHERE THE SUM OF ALL HITS IS 1.
REMARK ======================================================================
AUTHOR 6556-8091-7528 UWE HOBOHM, ROCHE, PRPC 65/303, CH-4002 BASEL
REMARK ======================================================================
SEQRES T0019 MAERYISQRHWSQLPPEEQIRVWEDYEAGRATTFLVEPERKRTKRRRGEH 
SEQRES T0019 STKPKCENPTWYRPARYKALSGQLGHRYNRLVKKDPVTGEQSLRMHMSRH 
SEQRES T0019 PFYVQKRTFAGRKYAFRPEKQRLLDAVWPVLVSFSDAGTHTVGMSVSRLA
SEQRES T0019 KEISPKDSKGKVIPELEVTVSRLSRLLAEQVRFGVLGMSEETMWDRETRQ
SEQRES T0019 RLPRYVWITPAGWQMLGVDMVKLHEQQQKRLRESEIRQQLIREGVLREDE
SEQRES T0019 DISVHAARKRWYLQRSQDALKHRRAKAAARKRANLLKKLPADQQIYEMSQ
SEQRES T0019 HILKRMPPDEAYWCTPERLQQLAIRELYQLELTLAAPPPH           
REMARK 340 RESIDUES
REMARK ======================================================================
TSCORE T0019 0 80      1HNI B 0
TSCORE T0019 0 79      3HVT A 0
TSCORE T0019 0 10      NONE _ 0
REMARK A PROPSEARCH DATABASE SEARCH WAS PERFORMED AGAINST THE ENTIRE PDB 
REMARK RELEASE AUGUST 1996 (7926 CHAINS)
REMARK CPU: 10 MIN (SGI POWER CHALLENGE)
REMARK ONLY REVERSE TRANSCRIPTASES AMONG THE FIRST 500 HITS WITH SLIGHTLY
REMARK DIFFERING ALIGNMENTS
REMARK ======================================================================
TALIGN T0019 0 1 340     1HNI B 0   28  367    1.0   1
TALIGN T0019 0 1 340     3HVT A 0   27  366    1.0   1
REMARK ALIGNMENT POSITIONS OF HIT REFER TO SEQUENCE, I.E. HIT POSITION 
REMARK NUMBERING DOES NOT ALWAYS MATCH PDB NUMBERING
REMARK ======================================================================

Uwe Hobohm
PRPC 65/303
F.Hoffmann-La Roche AG
CH-4070 Basel

email: uwe.hobohm@roche.com  
Tel.: ++41 61 688 6519
Fax.: ++41 61 688 1745


