



PFRMAT FRV1
REMARK ========================================================================
AUTHOR Willie Taylor and Robin Munro,
AUTHOR Division of Mathematical Biology,
AUTHOR National Institute for Medical Research,
AUTHOR The Ridgeway, Mill Hill, London NW7 1AA, U.K.
AUTHOR w_taylor@nimr.mrc.ac.uk 
AUTHOR r-munro@nimr.mrc.ac.uk 
AUTHOR Tel. +44-181-959-3666 (ext.2298), FAX +44-181-913-8545
REMARK ========================================================================
REMARK Threading results for the target T0023, compared against a
REMARK Database containing 319 Structures (extended UCLA benchmark set).
REMARK 
REMARK ========================================================================
REMARK T0023 KDO 8-P Synthase 
REMARK T0023 from E.coli, 284a.a.
REMARK T0023 Threading target T0023
SEQRES T0023 MKQKVVSIGDINVANDLPFVLLGGMNVLESRDLAMRICEHYVTVTQKLGI
SEQRES T0023 PYVFKASFDKANRSSIHSYRGPGLEEGMKIFQELKQTFGVKIITDVHEPS
SEQRES T0023 QAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGN
SEQRES T0023 IVDKFKEGGNEKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDV
SEQRES T0023 THALQCRDPFGAASGGRRAQVAELARAGMAVGLAGLFIEAHPDPEHAKCD
SEQRES T0023 GPSALPLAKLEPFLKQMKAIDDLVKGFEELDTSK
REMARK ========================================================================
REMARK
REMARK  
REMARK 
REMARK   
REMARK       ..........p--- USER>1ald
REMARK       ........p-b--- USER>>P1;JX0233
REMARK       ......p-b----- USER>>P1;ALFH_CAEEL
REMARK       ....p-b-p----- USER>>P1;ALF1_PEA
REMARK       ....|...b----- USER>>P1;ALF_PLAFA
REMARK       ....b-p------- USER>>P1;ALFC_SPIOL
REMARK       ......b------- USER>>P1;ALF_TRYBB
REMARK  165
REMARK       ............p- USER>>P1;KDSA_HAEIN
REMARK       ............b- USER>>T0023;
REMARK  
REMARK  
REMARK  block 8 = 9 seqs
REMARK  *USER>1ald :    ALDOLASE *A (E.C.4.1.2.13), HUMAN (HOMO $SAPIENS) SKELETAL MUSCLE: range=1-363, len=363
REMARK  *USER>>P1;JX0233 :      Fructose-1,6-bisphosphate aldolase alpha - Fruit fly (Drosophila melanogaster)
REMARK  *USER>>P1;ALFH_CAEEL :  PROBABLE FRUCTOSE-BISPHOSPHATE ALDOLASE (EC 4.1.2.13). - CAENORHABDITIS ELEGANS.
REMARK  *USER>>P1;ALF1_PEA :    FRUCTOSE-BISPHOSPHATE ALDOLASE, CYTOPLASMIC ISOZYME 1 (EC 4.1.2.13). - PISUM SATIVUM (GARDEN PEA).
REMARK  *USER>>P1;ALF_PLAFA :   FRUCTOSE-BISPHOSPHATE ALDOLASE (EC 4.1.2.13) (41 KD ANTIGEN). - PLASMODIUM FALCIPARUM.
REMARK  *USER>>P1;ALFC_SPIOL :  FRUCTOSE-BISPHOSPHATE ALDOLASE, CHLOROPLAST PRECURSOR (EC 4.1.2.13). - SPINACIA OLERACEA (SPINACH).
REMARK  *USER>>P1;ALF_TRYBB :   FRUCTOSE-BISPHOSPHATE ALDOLASE, GLYCOSOMAL (EC 4.1.2.13). - TRYPANOSOMA BRUCEI BRUCEI.
REMARK  *USER>>P1;KDSA_HAEIN :  2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (EC 4.1.2.16) (PHOSPHO-2- DEHYDRO-3-DEOXYOCTONATE ALDOLASE) (3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE SY
REMARK  *USER>>T0023; : KDO 8-P Synthase from E.coli, 284a.a.
REMARK  
REMARK            PYQYPALTPEQKKELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENrRFYRQLLLTADDRVN
REMARK         MTTYFNYPSK  ELQDELREIAQKIVAPGKGILAADESGPTHGKRLQDIGVENTEDNRRAYRQLLFSTDPKLA
REMARK       MATVGGAFKDSLTQAQKDELHQIALKIVQDGKGILAADESTGTIGKRLDAINLENNETNRQKYRQLLFTT PNLN
REMARK            MSAFVGKYAD   ELIKNAKYIATPGKGILAADESTGTIGKRLASINVENIEANRQALRELLFTS PNAL
REMARK     MAHCTEYMNAPKKLPADVAEELATTAQKLVQAGKGILAADESTQTIKKRFDNIKLENTIENRASYRDLLFGT KGLG
REMARK  VAGVRFTPSGSSSLTVRASSYADELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLISA PGLG
REMARK  SKRVEVLLTQLPAYNRLKTPYEAELIETAKKMTAPGKGLLAADESTGSCSKRFAGIGLSNTAEHRRQYRALMLEC EGFE
REMARK                             MQNKIVKIGNIDVAND                                   KP
REMARK                             MKQKVVSIGDINVAND                                   LP
REMARK  
REMARK  PCIGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKV  DKGVVPLA GTNGETTTQGLDGLSERCAQYKKDGADFAkW
REMARK  ENISGVILFHETLYQKADDGTPFAEILKKKGIILGIKV  DKGVVPLF GSEDEVTTQGLDDLAARCAQYKKDGCDFAKW
REMARK  QHISGVILYEETFHQSTDKGEKFTDLLIKQGIVPGIKL  DLGVVPLA GTIGEGTTQGLDKLAERAAAFKKGGCGFAKW
REMARK  QYLSGVILFEETLYQKSSEGKPFVEILQENNVIPGIKV  DKGVVELA GTDGETTTQGFDSLGARCQQYYKAGARFAKW
REMARK  KFISGAILFEETLFQKNEAGVPMVNLLHNENIIPGIKV  DKGLVNIP CTDEEKSTQGLDGLAERCKEYYKAGARFAKW
REMARK  QYVSGAILFEETLYQSTTDGKKMVDVLIEQGIVPGIKV  DKGWLPLP GSNDESWCQGLDGLACRSAAYYQQGARFAKW
REMARK  QYISGVILHDETVYQKAKTGETFPQYLRRRGVVPGIKT  DCGLEPLVEGAKGEQMTAGLDGYIKRAKKYYAMGCRFCKW
REMARK  FVLFGGMNVLESRDMAMQVCEAYVKVTEKLGVPYVFKASFDKANRSSIHSYRGPGMEEGL     KIFQELKDTFGVKII
REMARK  FVLLGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGM     KIFQELKQTFGVKII
REMARK  
REMARK  RCVLKIGEHT  PSALAIMENANVLARYASICQQ   NGIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHIY
REMARK  RCVLKIGKNT  PSYQSILENANVLARYASICQS   ERIVPIVEPEVLPDGDHDLDRAQKVTETVLAAVYKALSDHHVY
REMARK  RCVLNIGTHT  PSHLGMLENANVLARYASICQA   NGLVPIVEPEVLCDGEHDLARAQKVTEQVLAFVYKALADHHVY
REMARK  RAVLKIGPNE  PSELSIQQNAQGLARYAIICQE   NGLVLFVEPEILTDGSHDIAKCAAVTETVLAACYKALNDQHVL
REMARK  RTVLVIDTAKGKPTDLSIHETAWGLARYASICQQ   NRLVPIVEPEILADGPHSIEVCAVVTQKVLSCVFKALQENGVL
REMARK  RTVVSIPNGPS  ALAV KEAAWGLARYAAITQD   NGLDPILEPEIMLDGEHGIDRTFRVAQQVWAEVFFNLAENNVL
REMARK  RNVYKIQNGTV  SEAVVRFNAETLARYAILSQL   CGLVPIVEPEVMIDGTHDIETCQRVSQHVWSEVVSALHRHGVV
REMARK  TDVHEIYQCQPVADVVDIIQLPAFLARQTDLVEAMAKTGAVINVKKPQFLSPSQMGNIVEKIEECGNDKII  LCDRGTN
REMARK  TDVHEPSQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGNEKVI  LCDRGAN
REMARK  
REMARK  LEGTLLkPNMVTPGHACTQKFSHEEIAMATVTALRRTV PPAVTGITFLSGGQSEEEASINLNAINKCPLLKPWALTFSY
REMARK  LEGTLLKPNMVTAGQSAK KNTPEEIALATVQALRRTV PAAVTGVTFLSGGQSEEEATVNLSAINNVPLIRPWALTFSY
REMARK  LEGTLLKPNMVTPGQSSASKASHEAIGLATVTALRRGV PAAVPGITFLSGGQSELDATANLNAINSVQLGKPWKLTFSY
REMARK  LEGTLLKPNMVTPGSDSP KVSPEVIGEYTVNALRRTV PAAVPGIVFLSGGQSEEQATLNLNAMNKFDVVKPWTLSFSF
REMARK  LEGALLKPNMVTAGYECTAKTTTQDVGFLTVRTLRRTV PPALPGVVFLSGGQSEEEASVNLNSINALGPH PWALTFSY
REMARK  LEGSSLKPSMVGPGALSARKGPPEQVADYPLKLLHRRR GPVVPGIMVLSGGQSEVEATLNLNAMNQSPNP  WHVSFSY
REMARK  WEGCLLKPNMVVPGAESGLKGHAEQVAEYTVKTLARVI PPALPGVTFLSGGLSEVMASEYLNAMNNCPLPRPWKLTFSY
REMARK  FGYDNLIVDMLGFSVMKKASKGSPVIFDVTHSLQCRDPFGAASSGRRAQVTELARSGLAVGIAGLFLEAHPNPNQAKCDG
REMARK  FGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRRAQVAELARAGMAVGLAGLFIEAHPDPEHAKCDG
REMARK  
REMARK  GRALQASALKAWGGKKENLKAAQEEYVKRALANSLACQGKYTPSGQAGAAASES  LFVSNHAy
REMARK  GRALQASVLRAWAGKKENIAAGQNELLKRAKANGEAACGNYTAGSVKGFAGKDT  LHVDDHRY
REMARK  GRALQASVLKAWGGKDENIAAAQKTLLHRSKANGDASLGKYAGEDAAGAAA ES  LFVAKHSY
REMARK  GRALQQSTLKTWSGKKENVGKAQDVFLARCKANSEATLGKYGGGSGTGLAS ES  LHVKDYKY
REMARK  GRALQASVLNTWQGKKENVAKAREVLLQRAEANSLATYGKYKGGAGGENAG AS  LYEKKYVY
REMARK  ARALQNTCLKTWVEGQENVKAQDFAC   AKSNSLAQLGKYTGEGESEERKKDMFVK  ATLTY
REMARK  ARALQSSAIKRWGGKESGVEAGRRAFMHRAKMNSLAQLGKYNRADDD    KDSQSLYVAGNTY
REMARK  PSALPLSAL              EGFVSQMKAIDDLVKSFPELDTSI                 
REMARK  PSALPLAKL              EPFLKQMKAIDDLVKGFEELDTSK                 
REMARK  
REMARK  Target and a structure in an alignment (above), from which the
REMARK  threadings have been calculated
REMARK 
REMARK
REMARK
REMARK          5        10        15        20        25        30        35        40
REMARK  M K Q K V V S I G D I N V A N D L P F V L L G G M N V L E S R D L A M R I C E H
REMARK 18----------------------------3369---------------------------------------------- 
REMARK
REMARK         45        50        55        60        65        70        75        80
REMARK  Y V T V T Q K L G I P Y V F K A S F D K A N R S S I H S Y R G P G L E E G M K I 
REMARK  -----------------------------08    09------------16  17------------------2733--
REMARK
REMARK         85        90        95       100       105       110       115       120
REMARK  F Q E L K Q T F G V K I I T D V H E P S Q A Q P V A D V V D V I Q L P A F L A R 
REMARK  -------------------------------------------57    58----------------------------
REMARK
REMARK        125       130       135       140       145       150       155       160
REMARK  Q T D L V E A M A K T G A V I N V K K P Q F V S P G Q M G N I V D K F K E G G N
REMARK  -----------79      80----------------------------------------------------------
REMARK
REMARK        165       170       175       180       185       190       195       200
REMARK  E K V I L C D R G A N F G Y D N L V V D M L G F S I M K K V S G N S P V I F D V  
REMARK  -----1316----------------------------------------------------------------------
REMARK
REMARK        205       210       215       220       225       230       235       240
REMARK  T H A L Q C R D P F G A A S G G R R A Q V A E L A R A G M A V G L A G L F I E A
REMARK  ---------------60  61----------------------------------------------------------
REMARK
REMARK        245       250       255       260       265       270       275       280
REMARK  H P D P E H A K C D G P S A L P L A K L E P F L K Q M K A I D D L V K G F E E L
REMARK  -------------------------------------1025--------------------------------------
REMARK
REMARK      284       
REMARK  D T S K 
REMARK  -----48
REMARK
REMARK ========================================================================
TSCORE T0023 0  0.7     1ALD - 0
REMARK ========================================================================
TALIGN T0023 0    1   16        1ALD - 0         18   33        1.0     1
TALIGN T0023 0   17   56        1ALD - 0         69  108        1.0     1
TALIGN T0023 0   59   66        1ALD - 0        109  116        1.0     1
TALIGN T0023 0   68   78        1ALD - 0        117  127        1.0     1
TALIGN T0023 0   79  103        1ALD - 0        133  157        1.0     1
TALIGN T0023 0  106  127        1ALD - 0        158  179        1.0     1
TALIGN T0023 0  131  164        1ALD - 0        180  213        1.0     1
TALIGN T0023 0  165  209        1ALD - 0        216  260        1.0     1
TALIGN T0023 0  211  260        1ALD - 0        261  310        1.0     1
TALIGN T0023 0  261  284        1ALD - 0        325  348        1.0     1
REMARK ========================================================================
  


