


PFRMAT FRV1
AUTHOR 6776-3217-5205 M J E Sternberg
AUTHOR 6776-3217-5205 Imperial Cancer Research Fund
AUTHOR 6776-3217-5205 m.sternberg@icrf.icnet.uk
AUTHOR 6776-3217-5205 Details of all workers see below
REMARK ======================================================================
REMARK Threading results from FOLDFIT:
REMARK 
REMARK Work by Michael J E Sternberg (1), Paul A Bates (1), Andrew Lyall (2)
REMARK Robert B Russell (1), Mansoor A S Saqi (2) and Roger Sayle (2)
REMARK (1) Biomolecular Modelling Laboratory
REMARK Imperial Cancer Research Fund
REMARK Lincoln Inn Fields, London, WC2A 3PX, UK
REMARK Tel +44 - 171 - 269- 3565
REMARK Fax +44 - 171 - 269 - 3479
REMARK URL http://bonsai.lif.icnet.uk
REMARK E-mail m.sternberg@icrf.icnet.uk
REMARK E-mail p.bates@icrf.icnet.uk 
REMARK E-mail r.russell@icrf.icnet.uk
REMARK (2) Bioinformatics Group
REMARK Glaxo Medicines Research Centre
REMARK Gunnels Wood Road
REMARK Stevenage, Herts, SG1 2NY, UK
REMARK Tel +44 -1438 - 745745
REMARK Tel +44 -1438 - 763082
REMARK E-mail al28044@ggr.co.uk
REMARK E-mail mass15599@ggr.co.uk
REMARK E-mail ras32425@ggr.co.uk
REMARK ===========================================================================
REMARK 
REMARK                             FOLDFIT
REMARK                             =======
REMARK The program was jointly and equally developed by the above two groups.
REMARK The program matches the (1) sequence, (2) predicted secondary structure
REMARK and (3) predicted burial of the unknown sequence against a database of 
REMARK known structures detailing (1) sequence, (2) actual and predicted secondary 
REMARK structure and (3) actual and predicted burial.  The matches are scored by 
REMARK matrices empirically derived from comparison of analogous and distantly 
REMARK homologous protein folds.  Searching is by a type I dynamic programming 
REMARK algorithm with afine secondary-structure dependant gap penalties.
REMARK 
REMARK ===========================================================================
REMARK ======================================================================
REMARK T0030 study
REMARK ======================================================================
REMARK 
REMARK (1) A consensus secondary structure assignment from multiply
REMARK aligned homologous sequences was made using results of DSC (King
REMARK & Sternberg, T0030 CASP Submission) PHD (Rost & Sander), SOPMA
REMARK (Geourjon & Deleage), NNPREDICT (Kneller, Harris & Cohen),
REMARK SSPRED (Mehta, Heringa & Argos) together with visual inspection.
REMARK A consensus prediction of secondary structure, together with
REMARK accessibilities from PHD was used as input to FOLDFIT.
REMARK 
REMARK (2) T0030 was scanned by FOLDFIT and the rank order of the PDB codes
REMARK matched by FOLDFIT are listed below in decreasing order of probability.
REMARK 
REMARK (3) Two distance restraints were available from disulphide
REMARK bonding data (Kremser and Rasched, Biocchemistry, 33, 13954-13958, 
REMARK 1994);  we made use of these in a post-processing fashion with the
REMARK results of FOLDFIT.  For each of the top 100 scoring folds identified 
REMARK above, 100 sub-optimal alignments were generated using the method of 
REMARK Saqi & Sternberg (J.Mol.Biol. 219, 727-732, 1991).  These alignments
REMARK were then *filtered* using methods similar to those described in 
REMARK Russell et al (J. Mol. Biol. 259, 349-365,1996) were then applied to 
REMARK remove alignments not satisfying disulphide (constrained to have C-alpha 
REMARK carbons within 10.0 angstroms and C-beta carbons within 8.0 angstroms).  
REMARK Leniency values of 4.0 angstroms on each distance and +/- 4 residues on
REMARK each sequence position were used to account for shifts in the orientation 
REMARK of secondary structures (expected in analogous protein structures) and
REMARK possible inaccuracies in the alignment.  Starting with 10 000 alignments 
REMARK from 100 folds, the restraints left 1585 alignments from 93 folds.  The 
REMARK first 44 folds listed below (ignoring NONE) are filtered folds ranked 
REMARK according to the FOLDFIT score The next 596 folds are those that were 
REMARK removed or not considered (i.e. not in the initial top 100) though 
REMARK still ranked according to the FOLDFIT score.
REMARK  
REMARK (4) The top ten scoring PDB entries passing the filters consists of
REMARK a variety of all beta folds, with the Immunoglobulin fold predominating 
REMARK and a notable presence of an OB folds (cold shock proteins 1MJC).  The
REMARK top ten scoring folds were assigned probabilities to reflect the FOLDFIT
REMARK ranking.
REMARK 
REMARK (5) For each matched fold, the top two scoring alignments satisfying
REMARK the distance restraints above were submitted.  The probabilities   
REMARK for the alignments were chosen subjectively.  
REMARK =======================================================================
REMARK ======================================================================
REMARK 
REMARK No domains assigned
REMARK
SEQREST T0030 ETVESCLAKPHTENSFTNVWKDDKTLDRYANYEGCLWNATGVVVCTGDET
SEQREST T0030 QCYGTWVPIGLAIPEN
REMARK 
REMARK ======================================================================
REMARK =======================================================================
REMARK 
REMARK FOLDS BELOW WERE KEPT AFTER THE FILTERS
REMARK 
TSCORE T0030 0 0.20 1TNM -  0 
TSCORE T0030 0 0.18 1MJC -  0 
TSCORE T0030 0 0.16 1FNA -  0 
TSCORE T0030 0 0.14 3EBX -  0 
TSCORE T0030 0 0.12 1WAP A  0 
TSCORE T0030 0 0.10 1HSB B  0 
TSCORE T0030 0 0.08 2SN3 -  0 
TSCORE T0030 0 0.06 1PK4 -  0 
TSCORE T0030 0 0.04 1LAB -  0 
TSCORE T0030 0 0.02 1TEN -  0 
TSCORE T0030 0 0.00 1TPG -  0 
TSCORE T0030 0 0.00 1FRD -  0 
TSCORE T0030 0 0.00 1HOE -  0 
TSCORE T0030 0 0.00 1UDI I  0 
TSCORE T0030 0 0.00 1ATA -  0 
TSCORE T0030 0 0.00 1PTX -  0 
TSCORE T0030 0 0.00 1TLK -  0 
TSCORE T0030 0 0.00 1AYA A  0 
TSCORE T0030 0 0.00 1HSQ -  0 
TSCORE T0030 0 0.00 1VCC -  0 
TSCORE T0030 0 0.00 1KJC -  0 
TSCORE T0030 0 0.00 1PND -  0 
TSCORE T0030 0 0.00 1HCC -  0 
TSCORE T0030 0 0.00 2KAU B  0 
TSCORE T0030 0 0.00 1STF I  0 
TSCORE T0030 0 0.00 1MSA A  0 
TSCORE T0030 0 0.00 1FBR -  0 
TSCORE T0030 0 0.00 1TGX A  0 
TSCORE T0030 0 0.00 1ABO A  0 
TSCORE T0030 0 0.00 1ERG -  0 
TSCORE T0030 0 0.00 2FXB -  0 
TSCORE T0030 0 0.00 1ONC -  0 
TSCORE T0030 0 0.00 1CD8 -  0 
TSCORE T0030 0 0.00 1UBI -  0 
TSCORE T0030 0 0.00 2MCM -  0 
TSCORE T0030 0 0.00 1TIG -  0 
TSCORE T0030 0 0.00 1FXR A  0 
TSCORE T0030 0 0.00 1LKK A  0 
TSCORE T0030 0 0.00 1SAP -  0 
TSCORE T0030 0 0.00 2PNA -  0 
TSCORE T0030 0 0.00 1SMP I  0 
TSCORE T0030 0 0.00 1MCA A  0 
TSCORE T0030 0 0.00 1YPC I  0 
TSCORE T0030 0 0.00 1EXG -  0 
TSCORE T0030 0 0.00 1FKB -  0 
TSCORE T0030 0 0.00 1NCG -  0 
TSCORE T0030 0 0.00 1SHG -  0 
TSCORE T0030 0 0.00 1HUM A  0 
TSCORE T0030 0 0.00 1BFG -  0 
TSCORE T0030 0 0.00 3IL8 -  0 
TSCORE T0030 0 0.00 1HCN B  0 
TSCORE T0030 0 0.00 1LTS D  0 
TSCORE T0030 0 0.00 1TTB A  0 
TSCORE T0030 0 0.00 1CSE I  0 
TSCORE T0030 0 0.00 2RSP A  0 
TSCORE T0030 0 0.00 1EGF -  0 
TSCORE T0030 0 0.00 9RNT -  0 
TSCORE T0030 0 0.00 1POH -  0 
TSCORE T0030 0 0.00 1GMP A  0 
TSCORE T0030 0 0.00 1HRE -  0 
TSCORE T0030 0 0.00 1DIF A  0 
TSCORE T0030 0 0.00 1CHC -  0 
TSCORE T0030 0 0.00 1AAL A  0 
TSCORE T0030 0 0.00 2AZA A  0 
TSCORE T0030 0 0.00 1TIF -  0 
TSCORE T0030 0 0.00 1RND -  0 
TSCORE T0030 0 0.00 2CDV -  0 
TSCORE T0030 0 0.00 1BGH -  0 
TSCORE T0030 0 0.00 1HIP -  0 
TSCORE T0030 0 0.00 2PLD A  0 
TSCORE T0030 0 0.00 1HCN A  0 
TSCORE T0030 0 0.00 1SLT B  0 
TSCORE T0030 0 0.00 1BOV A  0 
TSCORE T0030 0 0.00 2BOP A  0 
TSCORE T0030 0 0.00 1HIV A  0 
TSCORE T0030 0 0.00 1PAZ -  0 
TSCORE T0030 0 0.00 1FIV A  0 
TSCORE T0030 0 0.00 3SIC I  0 
TSCORE T0030 0 0.00 1PSP A  0 
TSCORE T0030 0 0.00 3RUB S  0 
TSCORE T0030 0 0.00 1BRN L  0 
TSCORE T0030 0 0.00 2MSB A  0 
TSCORE T0030 0 0.00 1HPI -  0 
TSCORE T0030 0 0.00 1ACF -  0 
TSCORE T0030 0 0.00 1RIS -  0 
TSCORE T0030 0 0.00 1LPB A  0 
TSCORE T0030 0 0.00 1BSR A  0 
TSCORE T0030 0 0.00 2BBK L  0 
TSCORE T0030 0 0.00 1AGI -  0 
TSCORE T0030 0 0.00 1MOL A  0 
TSCORE T0030 0 0.00 1COB A  0 
TSCORE T0030 0 0.00 1ILR 1  0 
TSCORE T0030 0 0.00 1ZAA C  0 
REMARK
REMARK =======================================================================
REMARK 
REMARK FOLDS BELOW WERE REMOVED BY THE DISTANCE FILTERS
REMARK 
TSCORE T0030 0 0.00 1PDG A  0 
TSCORE T0030 0 0.00 1BET -  0 
TSCORE T0030 0 0.00 1TFI -  0 
TSCORE T0030 0 0.00 1HCG B  0 
TSCORE T0030 0 0.00 1CDC B  0 
TSCORE T0030 0 0.00 4SGB I  0 
TSCORE T0030 0 0.00 1PVC 4  0 
REMARK
REMARK =======================================================================
REMARK 
REMARK FOLDS BELOW WERE RANKED BELOW 100 IN THE INITIAL SEARCH
REMARK
TSCORE T0030 0 0.00 1SSR -  0 
TSCORE T0030 0 0.00 2HIP A  0 
TSCORE T0030 0 0.00 1PIL -  0 
TSCORE T0030 0 0.00 1PNE -  0 
TSCORE T0030 0 0.00 3TRX -  0 
TSCORE T0030 0 0.00 1PHT -  0 
TSCORE T0030 0 0.00 1SPB P  0 
TSCORE T0030 0 0.00 1FXD -  0 
TSCORE T0030 0 0.00 1VIL -  0 
TSCORE T0030 0 0.00 1XXB A  0 
TSCORE T0030 0 0.00 1I1B -  0 
TSCORE T0030 0 0.00 1PBA -  0 
TSCORE T0030 0 0.00 2TRX A  0 
TSCORE T0030 0 0.00 2DRP A  0 
TSCORE T0030 0 0.00 1HPT -  0 
TSCORE T0030 0 0.00 1RSY -  0 
TSCORE T0030 0 0.00 1DUP A  0 
TSCORE T0030 0 0.00 1AAP A  0 
TSCORE T0030 0 0.00 1NCF A  0 
TSCORE T0030 0 0.00 3AAH B  0 
TSCORE T0030 0 0.00 1PTS A  0 
TSCORE T0030 0 0.00 1KPT A  0 
TSCORE T0030 0 0.00 1ABA -  0 
TSCORE T0030 0 0.00 1GAT A  0 
TSCORE T0030 0 0.00 1CEW I  0 
TSCORE T0030 0 0.00 1ISU A  0 
TSCORE T0030 0 0.00 1TNS -  0 
TSCORE T0030 0 0.00 1DYN A  0 
TSCORE T0030 0 0.00 8RXN A  0 
TSCORE T0030 0 0.00 1IXA -  0 
TSCORE T0030 0 0.00 1TNF A  0 
TSCORE T0030 0 0.00 1PYI A  0 
TSCORE T0030 0 0.00 2GF1 -  0 
TSCORE T0030 0 0.00 1MSC -  0 
TSCORE T0030 0 0.00 1GPR -  0 
TSCORE T0030 0 0.00 7API B  0 
TSCORE T0030 0 0.00 1ICE B  0 
TSCORE T0030 0 0.00 1CDA A  0 
TSCORE T0030 0 0.00 1LEA -  0 
TSCORE T0030 0 0.00 1CGJ I  0 
TSCORE T0030 0 0.00 1HCD -  0 
TSCORE T0030 0 0.00 1PUC -  0 
TSCORE T0030 0 0.00 1BPK -  0 
TSCORE T0030 0 0.00 3B5C -  0 
TSCORE T0030 0 0.00 1GTQ A  0 
TSCORE T0030 0 0.00 1HYM A  0 
TSCORE T0030 0 0.00 1HST A  0 
TSCORE T0030 0 0.00 1OTF A  0 
TSCORE T0030 0 0.00 1CTF -  0 
TSCORE T0030 0 0.00 4FXN -  0 
TSCORE T0030 0 0.00 2CHS A  0 
TSCORE T0030 0 0.00 1TIE -  0 
TSCORE T0030 0 0.00 2SNV -  0 
TSCORE T0030 0 0.00 1PRT D  0 
TSCORE T0030 0 0.00 1HNR -  0 
TSCORE T0030 0 0.00 1PYA A  0 
TSCORE T0030 0 0.00 1MDY A  0 
TSCORE T0030 0 0.00 1CID -  0 
TSCORE T0030 0 0.00 1FDD -  0 
TSCORE T0030 0 0.00 1PDC -  0 
TSCORE T0030 0 0.00 1SNC -  0 
TSCORE T0030 0 0.00 451C -  0 
TSCORE T0030 0 0.00 1INA -  0 
TSCORE T0030 0 0.00 2ACH B  0 
TSCORE T0030 0 0.00 1CLG A  0 
TSCORE T0030 0 0.00 1NEQ -  0 
TSCORE T0030 0 0.00 1APL C  0 
TSCORE T0030 0 0.00 1ENH -  0 
TSCORE T0030 0 0.00 1BTD A  0 
TSCORE T0030 0 0.00 1POA -  0 
TSCORE T0030 0 0.00 1YCC -  0 
TSCORE T0030 0 0.00 3SGB I  0 
TSCORE T0030 0 0.00 1APK -  0 
TSCORE T0030 0 0.00 1PKP -  0 
TSCORE T0030 0 0.00 1ESL -  0 
TSCORE T0030 0 0.00 1PRT F  0 
TSCORE T0030 0 0.00 1DIS -  0 
TSCORE T0030 0 0.00 1REG X  0 
TSCORE T0030 0 0.00 1BTN -  0 
TSCORE T0030 0 0.00 1MHL A  0 
TSCORE T0030 0 0.00 1R69 -  0 
TSCORE T0030 0 0.00 1BI6 H  0 
TSCORE T0030 0 0.00 2CPL -  0 
TSCORE T0030 0 0.00 2CLG A  0 
TSCORE T0030 0 0.00 2PHY -  0 
TSCORE T0030 0 0.00 5P21 -  0 
TSCORE T0030 0 0.00 1FIA B  0 
TSCORE T0030 0 0.00 1POC -  0 
TSCORE T0030 0 0.00 3CHY -  0 
TSCORE T0030 0 0.00 2BPA 3  0 
TSCORE T0030 0 0.00 1VHH -  0 
TSCORE T0030 0 0.00 1ICE A  0 
TSCORE T0030 0 0.00 1CMB A  0 
TSCORE T0030 0 0.00 2PF2 -  0 
TSCORE T0030 0 0.00 4GCR -  0 
TSCORE T0030 0 0.00 1TFG -  0 
TSCORE T0030 0 0.00 1BBP A  0 
TSCORE T0030 0 0.00 4FX2 -  0 
TSCORE T0030 0 0.00 1GMF A  0 
TSCORE T0030 0 0.00 1ALS -  0 
TSCORE T0030 0 0.00 2PRD -  0 
TSCORE T0030 0 0.00 1HLE B  0 
TSCORE T0030 0 0.00 1HRY A  0 
TSCORE T0030 0 0.00 1TAB I  0 
TSCORE T0030 0 0.00 1LCC A  0 
TSCORE T0030 0 0.00 1AAK -  0 
TSCORE T0030 0 0.00 1MUP -  0 
TSCORE T0030 0 0.00 1PTQ -  0 
TSCORE T0030 0 0.00 2APD -  0 
TSCORE T0030 0 0.00 2CRD -  0 
TSCORE T0030 0 0.00 1LBA -  0 
TSCORE T0030 0 0.00 1PAI B  0 
TSCORE T0030 0 0.00 1CYX -  0 
TSCORE T0030 0 0.00 3CD4 -  0 
TSCORE T0030 0 0.00 1HLH A  0 
TSCORE T0030 0 0.00 1HYP -  0 
TSCORE T0030 0 0.00 2IHL -  0 
TSCORE T0030 0 0.00 1DCH A  0 
TSCORE T0030 0 0.00 5PAL -  0 
TSCORE T0030 0 0.00 1VMO A  0 
TSCORE T0030 0 0.00 1CYI -  0 
TSCORE T0030 0 0.00 1RBP -  0 
TSCORE T0030 0 0.00 1CAG B  0 
TSCORE T0030 0 0.00 1UTG -  0 
TSCORE T0030 0 0.00 1COO -  0 
TSCORE T0030 0 0.00 1PRR -  0 
TSCORE T0030 0 0.00 1AFA 1  0 
TSCORE T0030 0 0.00 1CXC -  0 
TSCORE T0030 0 0.00 1DFN A  0 
TSCORE T0030 0 0.00 1SCM A  0 
TSCORE T0030 0 0.00 1YRN A  0 
TSCORE T0030 0 0.00 1LFB -  0 
TSCORE T0030 0 0.00 1CC5 -  0 
TSCORE T0030 0 0.00 1CAU B  0 
TSCORE T0030 0 0.00 2MEV 4  0 
TSCORE T0030 0 0.00 4CPV -  0 
TSCORE T0030 0 0.00 1OFV -  0 
TSCORE T0030 0 0.00 1CBN -  0 
TSCORE T0030 0 0.00 1BHP -  0 
TSCORE T0030 0 0.00 1ITG -  0 
TSCORE T0030 0 0.00 2RN2 -  0 
TSCORE T0030 0 0.00 1DME -  0 
TSCORE T0030 0 0.00 1WHT B  0 
TSCORE T0030 0 0.00 2KAU A  0 
TSCORE T0030 0 0.00 1CYN A  0 
TSCORE T0030 0 0.00 1GRJ -  0 
TSCORE T0030 0 0.00 1GFF 2  0 
TSCORE T0030 0 0.00 1BBL -  0 
TSCORE T0030 0 0.00 1HCR A  0 
TSCORE T0030 0 0.00 1BCX -  0 
TSCORE T0030 0 0.00 3HHR B  0 
TSCORE T0030 0 0.00 1GAR B  0 
TSCORE T0030 0 0.00 1HTR P  0 
TSCORE T0030 0 0.00 1OTG A  0 
TSCORE T0030 0 0.00 1KNB -  0 
TSCORE T0030 0 0.00 1BMV 1  0 
TSCORE T0030 0 0.00 1ASU -  0 
TSCORE T0030 0 0.00 1LLI A  0 
TSCORE T0030 0 0.00 1MEA -  0 
TSCORE T0030 0 0.00 1EHS -  0 
TSCORE T0030 0 0.00 1PDN C  0 
TSCORE T0030 0 0.00 1HUR A  0 
TSCORE T0030 0 0.00 1FOS E  0 
TSCORE T0030 0 0.00 1MYK A  0 
TSCORE T0030 0 0.00 1CCO -  0 
TSCORE T0030 0 0.00 1FOS F  0 
TSCORE T0030 0 0.00 1MLP A  0 
TSCORE T0030 0 0.00 1LFA A  0 
TSCORE T0030 0 0.00 1DMC -  0 
TSCORE T0030 0 0.00 1BBA -  0 
TSCORE T0030 0 0.00 1FC2 C  0 
TSCORE T0030 0 0.00 8ATC B  0 
TSCORE T0030 0 0.00 1PHR -  0 
TSCORE T0030 0 0.00 1PPT -  0 
TSCORE T0030 0 0.00 8DFR -  0 
TSCORE T0030 0 0.00 1SAC A  0 
TSCORE T0030 0 0.00 1CFB -  0 
TSCORE T0030 0 0.00 1TBP A  0 
TSCORE T0030 0 0.00 1ECM A  0 
TSCORE T0030 0 0.00 1FLX -  0 
TSCORE T0030 0 0.00 1TSR A  0 
TSCORE T0030 0 0.00 9WGA A  0 
TSCORE T0030 0 0.00 1RFB A  0 
TSCORE T0030 0 0.00 1CWP A  0 
TSCORE T0030 0 0.00 2STV -  0 
TSCORE T0030 0 0.00 2HFT -  0 
TSCORE T0030 0 0.00 1GP1 A  0 
TSCORE T0030 0 0.00 1CHD -  0 
TSCORE T0030 0 0.00 1HUL A  0 
TSCORE T0030 0 0.00 1RCB -  0 
TSCORE T0030 0 0.00 2MTA C  0 
TSCORE T0030 0 0.00 1BBT 1  0 
TSCORE T0030 0 0.00 1PPE I  0 
TSCORE T0030 0 0.00 1AYH -  0 
TSCORE T0030 0 0.00 2PCD A  0 
TSCORE T0030 0 0.00 2TMV P  0 
TSCORE T0030 0 0.00 1BBT 4  0 
TSCORE T0030 0 0.00 2MHR -  0 
TSCORE T0030 0 0.00 1APH B  0 
TSCORE T0030 0 0.00 3ITR -  0 
TSCORE T0030 0 0.00 1TSS A  0 
TSCORE T0030 0 0.00 1VCA A  0 
TSCORE T0030 0 0.00 1PRT B  0 
TSCORE T0030 0 0.00 2WRP R  0 
TSCORE T0030 0 0.00 1IAA -  0 
TSCORE T0030 0 0.00 1HJR A  0 
TSCORE T0030 0 0.00 1HTM D  0 
TSCORE T0030 0 0.00 2END -  0 
TSCORE T0030 0 0.00 1HMP A  0 
TSCORE T0030 0 0.00 1IAG -  0 
TSCORE T0030 0 0.00 1DSB A  0 
TSCORE T0030 0 0.00 1ILL R  0 
TSCORE T0030 0 0.00 1LTS C  0 
TSCORE T0030 0 0.00 4SBV A  0 
TSCORE T0030 0 0.00 1ILL G  0 
TSCORE T0030 0 0.00 1AHT L  0 
TSCORE T0030 0 0.00 256B A  0 
TSCORE T0030 0 0.00 1BBT 2  0 
TSCORE T0030 0 0.00 1MFA -  0 
TSCORE T0030 0 0.00 2CCY A  0 
TSCORE T0030 0 0.00 1L92 -  0 
TSCORE T0030 0 0.00 1ERL -  0 
TSCORE T0030 0 0.00 1SRA -  0 
TSCORE T0030 0 0.00 1LTS A  0 
TSCORE T0030 0 0.00 1PVU A  0 
TSCORE T0030 0 0.00 1BOM B  0 
TSCORE T0030 0 0.00 1SGT -  0 
TSCORE T0030 0 0.00 1GCN -  0 
TSCORE T0030 0 0.00 1WFB A  0 
TSCORE T0030 0 0.00 1CUS -  0 
TSCORE T0030 0 0.00 3CLA -  0 
TSCORE T0030 0 0.00 1GPC -  0 
TSCORE T0030 0 0.00 1STD -  0 
TSCORE T0030 0 0.00 1PPN -  0 
TSCORE T0030 0 0.00 1THV -  0 
TSCORE T0030 0 0.00 1CGO -  0 
TSCORE T0030 0 0.00 1BBH A  0 
TSCORE T0030 0 0.00 1COS A  0 
TSCORE T0030 0 0.00 2ZTA A  0 
TSCORE T0030 0 0.00 1RPB -  0 
TSCORE T0030 0 0.00 1APH A  0 
TSCORE T0030 0 0.00 1AK3 A  0 
TSCORE T0030 0 0.00 2PTE E  0 
TSCORE T0030 0 0.00 2SPC A  0 
TSCORE T0030 0 0.00 1IFI -  0 
TSCORE T0030 0 0.00 1LIS -  0 
TSCORE T0030 0 0.00 1RLX A  0 
TSCORE T0030 0 0.00 1ILM B  0 
TSCORE T0030 0 0.00 1ASH -  0 
TSCORE T0030 0 0.00 1BOM A  0 
TSCORE T0030 0 0.00 1DBS -  0 
TSCORE T0030 0 0.00 1LYP -  0 
TSCORE T0030 0 0.00 1EDN -  0 
TSCORE T0030 0 0.00 1RLX B  0 
TSCORE T0030 0 0.00 1SCS -  0 
TSCORE T0030 0 0.00 1OPR -  0 
TSCORE T0030 0 0.00 1PVC 3  0 
TSCORE T0030 0 0.00 1SE2 -  0 
TSCORE T0030 0 0.00 1LEC -  0 
TSCORE T0030 0 0.00 1APM I  0 
TSCORE T0030 0 0.00 1UDG -  0 
TSCORE T0030 0 0.00 2PCD M  0 
TSCORE T0030 0 0.00 1DMA A  0 
TSCORE T0030 0 0.00 1DTR -  0 
TSCORE T0030 0 0.00 1BAB A  0 
TSCORE T0030 0 0.00 1HLB -  0 
TSCORE T0030 0 0.00 6RLX A  0 
TSCORE T0030 0 0.00 6RLX B  0 
TSCORE T0030 0 0.00 3GAP A  0 
TSCORE T0030 0 0.00 2MLT A  0 
TSCORE T0030 0 0.00 1MMH 6  0 
TSCORE T0030 0 0.00 1NFP -  0 
TSCORE T0030 0 0.00 1BAM -  0 
TSCORE T0030 0 0.00 1HDR -  0 
TSCORE T0030 0 0.00 2LAO -  0 
TSCORE T0030 0 0.00 1MMO G  0 
TSCORE T0030 0 0.00 2DNJ A  0 
TSCORE T0030 0 0.00 2SCP A  0 
TSCORE T0030 0 0.00 3MDS A  0 
TSCORE T0030 0 0.00 1SOL -  0 
TSCORE T0030 0 0.00 4MBA -  0 
TSCORE T0030 0 0.00 1FLP -  0 
TSCORE T0030 0 0.00 1LKI -  0 
TSCORE T0030 0 0.00 1MMH 5  0 
TSCORE T0030 0 0.00 1MMH 3  0 
TSCORE T0030 0 0.00 1ILK -  0 
TSCORE T0030 0 0.00 1FCS -  0 
TSCORE T0030 0 0.00 1PNK A  0 
TSCORE T0030 0 0.00 1HBG -  0 
TSCORE T0030 0 0.00 1ECO -  0 
TSCORE T0030 0 0.00 1ITH A  0 
TSCORE T0030 0 0.00 1FCD C  0 
TSCORE T0030 0 0.00 1CDL G  0 
TSCORE T0030 0 0.00 1PRT A  0 
TSCORE T0030 0 0.00 1CPC A  0 
TSCORE T0030 0 0.00 1MMH 7  0 
TSCORE T0030 0 0.00 1BTS -  0 
TSCORE T0030 0 0.00 1BPB -  0 
TSCORE T0030 0 0.00 3SDH A  0 
TSCORE T0030 0 0.00 1PLQ -  0 
TSCORE T0030 0 0.00 1GLQ A  0 
TSCORE T0030 0 0.00 1GDI -  0 
TSCORE T0030 0 0.00 1LE4 -  0 
TSCORE T0030 0 0.00 1RVE A  0 
TSCORE T0030 0 0.00 153L -  0 
TSCORE T0030 0 0.00 3PGM -  0 
TSCORE T0030 0 0.00 1BTQ -  0 
TSCORE T0030 0 0.00 1HUW -  0 
TSCORE T0030 0 0.00 1CAJ -  0 
TSCORE T0030 0 0.00 1REC -  0 
TSCORE T0030 0 0.00 2AAI B  0 
TSCORE T0030 0 0.00 1CND -  0 
TSCORE T0030 0 0.00 2LIG A  0 
TSCORE T0030 0 0.00 2IFO -  0 
TSCORE T0030 0 0.00 1BGC -  0 
TSCORE T0030 0 0.00 1TPF A  0 
TSCORE T0030 0 0.00 1CPC L  0 
TSCORE T0030 0 0.00 1PYA B  0 
TSCORE T0030 0 0.00 1AEP -  0 
TSCORE T0030 0 0.00 1CTM -  0 
TSCORE T0030 0 0.00 1AHC -  0 
TSCORE T0030 0 0.00 1ARB -  0 
TSCORE T0030 0 0.00 1EAF -  0 
TSCORE T0030 0 0.00 1MMH 4  0 
TSCORE T0030 0 0.00 1MMH 2  0 
TSCORE T0030 0 0.00 1UBS A  0 
TSCORE T0030 0 0.00 1RCI -  0 
TSCORE T0030 0 0.00 1OVI -  0 
TSCORE T0030 0 0.00 1IFM -  0 
TSCORE T0030 0 0.00 1MMH 1  0 
TSCORE T0030 0 0.00 1CSE E  0 
TSCORE T0030 0 0.00 1ABK -  0 
TSCORE T0030 0 0.00 1WHT A  0 
TSCORE T0030 0 0.00 1HDC A  0 
TSCORE T0030 0 0.00 1MAT -  0 
TSCORE T0030 0 0.00 1MML -  0 
TSCORE T0030 0 0.00 1HSB A  0 
TSCORE T0030 0 0.00 1AMB -  0 
TSCORE T0030 0 0.00 1NBA A  0 
TSCORE T0030 0 0.00 1LXA -  0 
TSCORE T0030 0 0.00 1DRI -  0 
TSCORE T0030 0 0.00 1CNS A  0 
TSCORE T0030 0 0.00 4BLM A  0 
TSCORE T0030 0 0.00 1ERI A  0 
TSCORE T0030 0 0.00 2MEV 1  0 
TSCORE T0030 0 0.00 1PRC H  0 
TSCORE T0030 0 0.00 1EDT -  0 
TSCORE T0030 0 0.00 2TCT -  0 
TSCORE T0030 0 0.00 1HSA A  0 
TSCORE T0030 0 0.00 1DEA A  0 
TSCORE T0030 0 0.00 1PVC 2  0 
TSCORE T0030 0 0.00 1PVC 1  0 
TSCORE T0030 0 0.00 1ENY -  0 
TSCORE T0030 0 0.00 1DIH -  0 
TSCORE T0030 0 0.00 1HAN -  0 
TSCORE T0030 0 0.00 2SAS -  0 
TSCORE T0030 0 0.00 1BMT A  0 
TSCORE T0030 0 0.00 2HNP -  0 
TSCORE T0030 0 0.00 1NIP B  0 
TSCORE T0030 0 0.00 1DAA A  0 
TSCORE T0030 0 0.00 1PYP -  0 
TSCORE T0030 0 0.00 1TYS -  0 
TSCORE T0030 0 0.00 1FNB -  0 
TSCORE T0030 0 0.00 1COL A  0 
TSCORE T0030 0 0.00 1TML -  0 
TSCORE T0030 0 0.00 1CNV -  0 
TSCORE T0030 0 0.00 1PDA -  0 
TSCORE T0030 0 0.00 1YPT A  0 
TSCORE T0030 0 0.00 1THT A  0 
TSCORE T0030 0 0.00 3TGL -  0 
TSCORE T0030 0 0.00 1SCU A  0 
TSCORE T0030 0 0.00 1CSM A  0 
TSCORE T0030 0 0.00 1GLT -  0 
TSCORE T0030 0 0.00 1ORA -  0 
TSCORE T0030 0 0.00 1PBN -  0 
TSCORE T0030 0 0.00 1NAR -  0 
TSCORE T0030 0 0.00 1TLF A  0 
TSCORE T0030 0 0.00 1NAL 1  0 
TSCORE T0030 0 0.00 2REB -  0 
TSCORE T0030 0 0.00 1EZM -  0 
TSCORE T0030 0 0.00 1BCO -  0 
TSCORE T0030 0 0.00 1CSN -  0 
TSCORE T0030 0 0.00 1PGS -  0 
TSCORE T0030 0 0.00 8ABP -  0 
TSCORE T0030 0 0.00 1BIA -  0 
TSCORE T0030 0 0.00 1AMP -  0 
TSCORE T0030 0 0.00 2PIA -  0 
TSCORE T0030 0 0.00 2DLN -  0 
TSCORE T0030 0 0.00 1BAC -  0 
TSCORE T0030 0 0.00 1PRN -  0 
TSCORE T0030 0 0.00 1EMD -  0 
TSCORE T0030 0 0.00 1CTT -  0 
TSCORE T0030 0 0.00 1PPK E  0 
TSCORE T0030 0 0.00 1GHR -  0 
TSCORE T0030 0 0.00 2HAD -  0 
TSCORE T0030 0 0.00 1IRK -  0 
TSCORE T0030 0 0.00 1APT -  0 
TSCORE T0030 0 0.00 1CTC -  0 
TSCORE T0030 0 0.00 1FRP A  0 
TSCORE T0030 0 0.00 1ESC -  0 
TSCORE T0030 0 0.00 1XYZ A  0 
TSCORE T0030 0 0.00 1BDM A  0 
TSCORE T0030 0 0.00 1ADS -  0 
TSCORE T0030 0 0.00 1SBP -  0 
TSCORE T0030 0 0.00 1PFK A  0 
TSCORE T0030 0 0.00 2BBV A  0 
TSCORE T0030 0 0.00 2CYP -  0 
TSCORE T0030 0 0.00 1HGE A  0 
TSCORE T0030 0 0.00 1GD1 O  0 
TSCORE T0030 0 0.00 1MLA -  0 
TSCORE T0030 0 0.00 1GIA -  0 
TSCORE T0030 0 0.00 3ECA A  0 
TSCORE T0030 0 0.00 1TAH B  0 
TSCORE T0030 0 0.00 1QOR A  0 
TSCORE T0030 0 0.00 6LDH -  0 
TSCORE T0030 0 0.00 1TCA -  0 
TSCORE T0030 0 0.00 1NIF -  0 
TSCORE T0030 0 0.00 2LIV -  0 
TSCORE T0030 0 0.00 4TS1 A  0 
TSCORE T0030 0 0.00 9LDT A  0 
TSCORE T0030 0 0.00 1HMY -  0 
TSCORE T0030 0 0.00 2BBK H  0 
TSCORE T0030 0 0.00 1PTA -  0 
TSCORE T0030 0 0.00 1APM E  0 
TSCORE T0030 0 0.00 1HLE A  0 
TSCORE T0030 0 0.00 1CEO -  0 
TSCORE T0030 0 0.00 1OMF -  0 
TSCORE T0030 0 0.00 1ADD -  0 
TSCORE T0030 0 0.00 1BVP 1  0 
TSCORE T0030 0 0.00 1ARP -  0 
TSCORE T0030 0 0.00 3PTE -  0 
TSCORE T0030 0 0.00 2OHX A  0 
TSCORE T0030 0 0.00 2POL A  0 
TSCORE T0030 0 0.00 2MNR -  0 
TSCORE T0030 0 0.00 1PRC C  0 
TSCORE T0030 0 0.00 1PRC M  0 
TSCORE T0030 0 0.00 2SIL -  0 
TSCORE T0030 0 0.00 1FBA A  0 
TSCORE T0030 0 0.00 3BCL -  0 
TSCORE T0030 0 0.00 2BLT A  0 
TSCORE T0030 0 0.00 2NAC A  0 
TSCORE T0030 0 0.00 1AXN -  0 
TSCORE T0030 0 0.00 1PEA -  0 
TSCORE T0030 0 0.00 1CHR A  0 
TSCORE T0030 0 0.00 1OMP -  0 
TSCORE T0030 0 0.00 1HPM -  0 
TSCORE T0030 0 0.00 1MRR A  0 
TSCORE T0030 0 0.00 1SCU B  0 
TSCORE T0030 0 0.00 1XRA -  0 
TSCORE T0030 0 0.00 1DOB -  0 
TSCORE T0030 0 0.00 1NSC A  0 
TSCORE T0030 0 0.00 1PHP -  0 
TSCORE T0030 0 0.00 1FPS -  0 
TSCORE T0030 0 0.00 1UBS B  0 
TSCORE T0030 0 0.00 1OYB -  0 
TSCORE T0030 0 0.00 1EFT -  0 
TSCORE T0030 0 0.00 1FCD A  0 
TSCORE T0030 0 0.00 7AAT A  0 
TSCORE T0030 0 0.00 1XIC -  0 
TSCORE T0030 0 0.00 1VSG A  0 
TSCORE T0030 0 0.00 3MDD A  0 
TSCORE T0030 0 0.00 1CHM A  0 
TSCORE T0030 0 0.00 1INP -  0 
TSCORE T0030 0 0.00 4ICD -  0 
TSCORE T0030 0 0.00 1AMG -  0 
TSCORE T0030 0 0.00 1ADM A  0 
TSCORE T0030 0 0.00 1GFF 1  0 
TSCORE T0030 0 0.00 1PHB -  0 
TSCORE T0030 0 0.00 4ENL -  0 
TSCORE T0030 0 0.00 1CEL A  0 
TSCORE T0030 0 0.00 2DKB -  0 
TSCORE T0030 0 0.00 1MMO B  0 
TSCORE T0030 0 0.00 1ADE A  0 
TSCORE T0030 0 0.00 1TPL A  0 
TSCORE T0030 0 0.00 1BNC A  0 
TSCORE T0030 0 0.00 1ALK A  0 
TSCORE T0030 0 0.00 1NHP -  0 
TSCORE T0030 0 0.00 1LGR -  0 
TSCORE T0030 0 0.00 1PII -  0 
TSCORE T0030 0 0.00 1PKY A  0 
TSCORE T0030 0 0.00 3GRS -  0 
TSCORE T0030 0 0.00 1GCB -  0 
TSCORE T0030 0 0.00 1GPH 1  0 
TSCORE T0030 0 0.00 1GLK -  0 
TSCORE T0030 0 0.00 5RUB B  0 
TSCORE T0030 0 0.00 1BNH -  0 
TSCORE T0030 0 0.00 1AKL -  0 
TSCORE T0030 0 0.00 2CTS -  0 
TSCORE T0030 0 0.00 1MIN A  0 
TSCORE T0030 0 0.00 1LAM -  0 
TSCORE T0030 0 0.00 2HPD A  0 
TSCORE T0030 0 0.00 1MYP C  0 
TSCORE T0030 0 0.00 1HKG -  0 
TSCORE T0030 0 0.00 1GLA G  0 
TSCORE T0030 0 0.00 1MHL C  0 
TSCORE T0030 0 0.00 1GLN -  0 
TSCORE T0030 0 0.00 1DPG A  0 
TSCORE T0030 0 0.00 1LYL B  0 
TSCORE T0030 0 0.00 1HNY -  0 
TSCORE T0030 0 0.00 1CBG -  0 
TSCORE T0030 0 0.00 1LYL A  0 
TSCORE T0030 0 0.00 1GPM A  0 
TSCORE T0030 0 0.00 1BTC -  0 
TSCORE T0030 0 0.00 3GLY -  0 
TSCORE T0030 0 0.00 3COX -  0 
TSCORE T0030 0 0.00 1DPP A  0 
TSCORE T0030 0 0.00 8CAT A  0 
TSCORE T0030 0 0.00 1SCC -  0 
TSCORE T0030 0 0.00 1OLB A  0 
TSCORE T0030 0 0.00 1DDT -  0 
TSCORE T0030 0 0.00 1OEL A  0 
TSCORE T0030 0 0.00 1PYD A  0 
TSCORE T0030 0 0.00 1CTN -  0 
TSCORE T0030 0 0.00 3DPV A  0 
TSCORE T0030 0 0.00 1ASO A  0 
TSCORE T0030 0 0.00 1THG -  0 
TSCORE T0030 0 0.00 1MMO D  0 
TSCORE T0030 0 0.00 1TSP -  0 
TSCORE T0030 0 0.00 1PNK B  0 
TSCORE T0030 0 0.00 1ECL -  0 
TSCORE T0030 0 0.00 2KAU C  0 
TSCORE T0030 0 0.00 3AAH A  0 
TSCORE T0030 0 0.00 3PMG A  0 
TSCORE T0030 0 0.00 1PTH -  0 
TSCORE T0030 0 0.00 1POX A  0 
TSCORE T0030 0 0.00 1GAL -  0 
TSCORE T0030 0 0.00 1DLC -  0 
TSCORE T0030 0 0.00 1LLA -  0 
TSCORE T0030 0 0.00 1AOR A  0 
TSCORE T0030 0 0.00 1GOF -  0 
TSCORE T0030 0 0.00 1TRK A  0 
TSCORE T0030 0 0.00 1LCF -  0 
TSCORE T0030 0 0.00 1CDG -  0 
TSCORE T0030 0 0.00 1OAC A  0 
TSCORE T0030 0 0.00 1ORD A  0 
TSCORE T0030 0 0.00 8ACN -  0 
TSCORE T0030 0 0.00 1GPB -  0 
TSCORE T0030 0 0.00 1DIK -  0 
TSCORE T0030 0 0.00 1DHX -  0 
TSCORE T0030 0 0.00 1RAE -  0 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 92
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:   92  Type: P today Check: 100 ..
REMARK Name:           T0030 Len:   92 Check: 100  Weight: 1.00
REMARK Name:            1fna Len:   92 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0030  .......... .......... ....ETVESC LAKPHTENS. FTNVWKDDKT 
REMARK        1fna  GSLEVVAATP TSLLISWDAP AVTVRYYRIT YGETGGNSPV QEFTVPGSKS 
REMARK              51                                          92
REMARK       T0030  LDRYANYE.G CLWNATGVVV CTGDETQCYG TWVPIGLAIP EN
REMARK        1fna  TATISGLKPG VDYTITVYAV TGRGDSPASS KPISINYRTE I.
TALIGN T0030 0    1   15 1FNA - 0      30      44     0.60   1 
TALIGN T0030 0   16   33 1FNA - 0      46      63     0.60   1 
TALIGN T0030 0   34   65 1FNA - 0      65      96     0.60   1 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 91
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:   91  Type: P today Check: 100 ..
REMARK Name:           T0030 Len:   91 Check: 100  Weight: 1.00
REMARK Name:            1fna Len:   91 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0030  .........E TVESCLAKPH TEN.SFTNVW KDDKTLDRY. ANYEGCLWNA 
REMARK        1fna  GSLEVVAATP TSLLISWDAP AVTVRYYRIT YGETGGNSPV QEFTVPGSKS 
REMARK              51                                         91
REMARK       T0030  TGVVV.CTGD ETQCYGTWVP IGLA.IPEN. .......... .
REMARK        1fna  TATISGLKPG VDYTITVYAV TGRGDSPASS KPISINYRTE I
TALIGN T0030 0    1   14 1FNA - 0      15      28     0.40   2 
TALIGN T0030 0   15   29 1FNA - 0      30      44     0.40   2 
TALIGN T0030 0   30   44 1FNA - 0      46      60     0.40   2 
TALIGN T0030 0   45   62 1FNA - 0      62      79     0.40   2 
TALIGN T0030 0   63   66 1FNA - 0      81      84     0.40   2 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 99
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:   99  Type: P today Check: 100 ..
REMARK Name:           T0030 Len:   99 Check: 100  Weight: 1.00
REMARK Name:           1hsbB Len:   99 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0030  .......... .........E TVESCLAKPH TENSFTNVWK DDKT...... 
REMARK       1hsbB  IQRTPKIQVY SRHPAENGKS NFLNCYVSGF HPSDIEVDLL KNGERIEKVE 
REMARK              51                                                 99
REMARK       T0030  .LDRYANYE. GCLWNATGVV V.CTGDETQC YGTWVPIGL. .AIPEN...
REMARK       1hsbB  HSDLSFSKDW SFYLLYYTEF TPTEKDEYAC RVNHVTLSQP KIVKWDRDM
TALIGN T0030 0    1   25 1HSB B 0      20      44     0.60   1 
TALIGN T0030 0   26   33 1HSB B 0      52      59     0.60   1 
TALIGN T0030 0   34   44 1HSB B 0      61      71     0.60   1 
TALIGN T0030 0   45   61 1HSB B 0      73      89     0.60   1 
TALIGN T0030 0   62   66 1HSB B 0      92      96     0.60   1 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 105
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:  105  Type: P today Check: 100 ..
REMARK Name:           T0030 Len:  105 Check: 100  Weight: 1.00
REMARK Name:           1hsbB Len:  105 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0030  .......... .......... .......... ...ETVESCL AKPHTENSFT 
REMARK       1hsbB  IQRTPKIQVY SRHPAENGKS NFLNCYVSGF HPSDIEVDLL KNGERIEKVE 
REMARK              51                                                 100
REMARK       T0030  NV.WKDDKTL DRYANYEGCL WN.....ATG VVVCTGDETQ CYGTWVPIGL 
REMARK       1hsbB  HSDLSFSKDW SFYLLYYTEF TPTEKDEYAC RVNHVTLSQP KIVKWDRDM. 
REMARK              101   105
REMARK       T0030  AIPEN
REMARK       1hsbB  .....
TALIGN T0030 0    1   19 1HSB B 0      34      52     0.40   2 
TALIGN T0030 0   20   38 1HSB B 0      54      72     0.40   2 
TALIGN T0030 0   39   60 1HSB B 0      78      99     0.40   2 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 80
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:   80  Type: P today Check: 100 ..
REMARK Name:           T0030 Len:   80 Check: 100  Weight: 1.00
REMARK Name:            1lab Len:   80 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0030  ETVESCLAKP HTENSFTNVW KDDKTLDRYA NYEG.CLWNA TG.VVVCTGD 
REMARK        1lab  AFEFKLPDIG EGIHEGEIVK WFVKPGDEVN EDDVLCEVQN DKAVVEIPSP 
REMARK              51                              80
REMARK       T0030  ETQCYGTWV. PIGLAIPEN. .......... 
REMARK        1lab  VKGKVLEILV PEGTVATVGQ TLITLDAPGY 
TALIGN T0030 0    1   34 1LAB - 0       1      34     0.60   1 
TALIGN T0030 0   35   41 1LAB - 0      36      42     0.60   1 
TALIGN T0030 0   42   57 1LAB - 0      44      59     0.60   1 
TALIGN T0030 0   58   66 1LAB - 0      61      69     0.60   1 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 80
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:   80  Type: P today Check: 100 ..
REMARK Name:           T0030 Len:   80 Check: 100  Weight: 1.00
REMARK Name:            1lab Len:   80 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0030  .......... ETVESCLAKP HTENSFTNVW KDDKTLDRYA NYEGCLWNAT 
REMARK        1lab  AFEFKLPDIG EGIHEGEIVK WFVKPGDEVN EDDVLCEVQN DKAVVEIPSP 
REMARK              51                              80
REMARK       T0030  .GVVV..CTG DETQCYGTWV PIGLAIPEN. 
REMARK        1lab  VKGKVLEILV PEGTVATVGQ TLITLDAPGY 
TALIGN T0030 0    1   40 1LAB - 0      11      50     0.40   2 
TALIGN T0030 0   41   44 1LAB - 0      52      55     0.40   2 
TALIGN T0030 0   45   66 1LAB - 0      58      79     0.40   2 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 69
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:   69  Type: P today Check: 100 ..
REMARK Name:           T0030 Len:   69 Check: 100  Weight: 1.00
REMARK Name:            1mjc Len:   69 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0030  .ETVESCLAK PHTENSFTNV WKDDKTLDRY ANYEGCLWNA TGVVVCTGDE 
REMARK        1mjc  SGKMTGIVKW FNADKGFGFI TPDDGSKDVF VHFSAIQNDG YKSLDEGQKV 
REMARK              51                   69
REMARK       T0030  TQCYGT.WVP I.GLAIPEN
REMARK        1mjc  SFTIESGAKG PAAGNVTSL
TALIGN T0030 0    1   55 1MJC - 0       3      57     0.60   1 
TALIGN T0030 0   56   59 1MJC - 0      59      62     0.60   1 
TALIGN T0030 0   60   66 1MJC - 0      64      70     0.60   1 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 75
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:   75  Type: P today Check: 100 ..
REMARK Name:           T0030 Len:   75 Check: 100  Weight: 1.00
REMARK Name:            1mjc Len:   75 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0030  ETVESCLAKP HTENSFTNVW KDDKTLD... ......RYAN YEGCLWNATG 
REMARK        1mjc  SGKMTGIVKW FNADKGFGFI TPDDGSKDVF VHFSAIQNDG YKSLDEGQKV 
REMARK              51                         75
REMARK       T0030  VVVCTGDETQ CYGTWVPIGL AIPEN
REMARK        1mjc  SFTIESGAKG PAAGNVTSL. .....
TALIGN T0030 0    1   27 1MJC - 0       2      28     0.40   2 
TALIGN T0030 0   28   60 1MJC - 0      38      70     0.40   2 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 79
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:   79  Type: P today Check: 100 ..
REMARK Name:           T0030 Len:   79 Check: 100  Weight: 1.00
REMARK Name:            1pk4 Len:   79 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0030  ....ETVESC LAK....PHT ENSFTNVWKD DKTLDRYANY EGCLWNATGV 
REMARK        1pk4  DCYHGDGQSY RGTSSTTTTG KKCQSWSSMT PHRHQKTPEN YPNAGLTMNY 
REMARK              51                             79
REMARK       T0030  VVCTGDETQC YGTWVPIGL. AIPEN....
REMARK        1pk4  CRNPDADKGP WCFTTDPSVR WEYCNLKKC
TALIGN T0030 0    1    9 1PK4 - 0       4      12     0.60   1 
TALIGN T0030 0   10   61 1PK4 - 0      17      70     0.60   1 
TALIGN T0030 0   62   66 1PK4 - 0      72      76     0.60   1 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 79
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:   79  Type: P today Check: 100 ..
REMARK Name:           T0030 Len:   79 Check: 100  Weight: 1.00
REMARK Name:            1pk4 Len:   79 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0030  ..ETVESCLA .KPHT...EN SFTNVW...K DDKTLDRYAN YEGCLWNATG 
REMARK        1pk4  DCYHGDGQSY RGTSSTTTTG KKCQSWSSMT PHRHQKTPEN YPNAGLTMNY 
REMARK              51                             79
REMARK       T0030  V.VVCTGDET QCYGTWVPIG .LAIPEN..
REMARK        1pk4  CRNPDADKGP WCFTTDPSVR WEYCNLKKC
TALIGN T0030 0    1    8 1PK4 - 0       2       9     0.40   2 
TALIGN T0030 0    9   12 1PK4 - 0      11      14     0.40   2 
TALIGN T0030 0   13   20 1PK4 - 0      18      25     0.40   2 
TALIGN T0030 0   21   42 1PK4 - 0      29      51     0.40   2 
TALIGN T0030 0   43   60 1PK4 - 0      53      71     0.40   2 
TALIGN T0030 0   61   66 1PK4 - 0      73      78     0.40   2 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 89
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:   89  Type: P today Check: 100 ..
REMARK Name:           T0030 Len:   89 Check: 100  Weight: 1.00
REMARK Name:            1ten Len:   89 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0030  .......... ..ETVESCLA KPHTEN..SF TNVWKDDKTL DRYANYEGCL 
REMARK        1ten  LDAPSQIEVK DVTDTTALIT WFKPLAEIDG IELTYGIKDV PGDRTTIDLT 
REMARK              51                                       89
REMARK       T0030  WNATGVVVCT GDETQCYGTW VPIGLAIPEN .........
REMARK        1ten  EDENQYSIGN LKPDTEYEVS LISRRGDMSS NPAKETFTT
TALIGN T0030 0    1   14 1TEN - 0     815     828     0.60   1 
TALIGN T0030 0   15   66 1TEN - 0     831     882     0.60   1 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 93
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:   93  Type: P today Check: 100 ..
REMARK Name:           T0030 Len:   93 Check: 100  Weight: 1.00
REMARK Name:            1ten Len:   93 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0030  .......... ....ETVESC LAKPHT.... ENSFTNVW.. KDDK...... 
REMARK        1ten  LDAPSQIEVK DVTDTTALIT WFKPLAEIDG IELTYGIKDV PGDRTTIDLT 
REMARK              51                                           93
REMARK       T0030  .TLDRYANYE GCLWNATGVV VCTGDETQCY GTWVPIGLAI PEN
REMARK        1ten  EDENQYSIGN LKP.DTEYEV SLISRRGDMS SNPAKETFTT ...
TALIGN T0030 0    1   12 1TEN - 0     817     828     0.40   2 
TALIGN T0030 0   13   20 1TEN - 0     833     840     0.40   2 
TALIGN T0030 0   21   24 1TEN - 0     843     846     0.40   2 
TALIGN T0030 0   25   36 1TEN - 0     854     865     0.40   2 
TALIGN T0030 0   38   63 1TEN - 0     866     891     0.40   2 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 91
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:   91  Type: P today Check: 100 ..
REMARK Name:           T0030 Len:   91 Check: 100  Weight: 1.00
REMARK Name:            1tnm Len:   91 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0030  .ETVESCLAK PHTENSFTNV WKDD.KTLDR YANYEGC.LW NATG..VVVC 
REMARK        1tnm  RILTKPRSMT VYEGESARFS CDTDGEPVPT VTWLRKGQVL STSARHQVTT 
REMARK              51                                         91
REMARK       T0030  TGDETQCYGT WVPI...... GLAIPEN... .......... .
REMARK        1tnm  TKYKSTFEIS SVQASDEGNY SVVVENSEGK QEAEFTLTIQ K
TALIGN T0030 0    1   23 1TNM - 0       2      24     0.60   1 
TALIGN T0030 0   24   35 1TNM - 0      26      37     0.60   1 
TALIGN T0030 0   36   41 1TNM - 0      39      44     0.60   1 
TALIGN T0030 0   42   59 1TNM - 0      47      64     0.60   1 
TALIGN T0030 0   60   66 1TNM - 0      71      77     0.60   1 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 91
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:   91  Type: P today Check: 100 ..
REMARK Name:           T0030 Len:   91 Check: 100  Weight: 1.00
REMARK Name:            1tnm Len:   91 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0030  .......... ...ETVESCL AKPH.TENSF TNVWKDDKTL DRYANYEGCL 
REMARK        1tnm  RILTKPRSMT VYEGESARFS CDTDGEPVPT VTWLRKGQVL STSARHQVTT 
REMARK              51                                         91
REMARK       T0030  WNATGVVVCT ..GDETQ..C YGTWVPIGL. ......AIPE N
REMARK        1tnm  TKYKSTFEIS SVQASDEGNY SVVVENSEGK QEAEFTLTIQ K
TALIGN T0030 0    1   11 1TNM - 0      14      24     0.40   2 
TALIGN T0030 0   12   46 1TNM - 0      26      60     0.40   2 
TALIGN T0030 0   47   51 1TNM - 0      63      67     0.40   2 
TALIGN T0030 0   52   61 1TNM - 0      70      79     0.40   2 
TALIGN T0030 0   62   66 1TNM - 0      87      91     0.40   2 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 74
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:   74  Type: P today Check: 100 ..
REMARK Name:           T0030 Len:   74 Check: 100  Weight: 1.00
REMARK Name:           1wapA Len:   74 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0030  ETVESCLAKP HTENSFTNVW KDDKTLDRYA NYEGCLWNAT GVVVCTGDE. 
REMARK       1wapA  ...DFVVIKA VEDGVNVIGL TRGTDTK.FH HSEKLD.KGE VIIAQFTEHT 
REMARK              51                        74
REMARK       T0030  .......TQC YGTWVPIGLA IPEN
REMARK       1wapA  SAIKVRGEAL IQTAYG.EMK SEKK
TALIGN T0030 0    4   27 1WAP A 0       8      31     0.60   1 
TALIGN T0030 0   29   36 1WAP A 0      32      39     0.60   1 
TALIGN T0030 0   38   49 1WAP A 0      40      51     0.60   1 
TALIGN T0030 0   50   58 1WAP A 0      60      68     0.60   1 
TALIGN T0030 0   60   66 1WAP A 0      69      75     0.60   1 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 69
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:   69  Type: P today Check: 100 ..
REMARK Name:           T0030 Len:   69 Check: 100  Weight: 1.00
REMARK Name:           1wapA Len:   69 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0030  ETVESCLAKP HTENSFTNVW KDDKT.LDRY ANYEG..CLW NATGVVVCTG 
REMARK       1wapA  .DFVVIKAVE DGVNVIGLTR GTDTKFHHSE KLDKGEVIIA QFTEHTSAIK 
REMARK              51                   69
REMARK       T0030  DETQCYGTWV PIGLAIPEN
REMARK       1wapA  VRGEALIQTA YGEMKSEKK
TALIGN T0030 0    2   25 1WAP A 0       8      31     0.40   2 
TALIGN T0030 0   26   34 1WAP A 0      33      41     0.40   2 
TALIGN T0030 0   35   66 1WAP A 0      44      75     0.40   2 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 69
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:   69  Type: P today Check: 100 ..
REMARK Name:           T0030 Len:   69 Check: 100  Weight: 1.00
REMARK Name:            2sn3 Len:   69 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0030  ETVESCLAKP HTENSFTNVW KDDKTLDRYA NYEG..CLWN ATG.VVVCTG 
REMARK        2sn3  KEGYLVKKSD GCKYGCLKLG ENEGCDTECK AKNQGGSYGY CYAFACWCEG 
REMARK              51                   69
REMARK       T0030  DETQCYGTWV PIGLAIPEN
REMARK        2sn3  LPEST..PTY PLPNKSC..
TALIGN T0030 0    1   34 2SN3 - 0       1      34     0.60   1 
TALIGN T0030 0   35   41 2SN3 - 0      37      43     0.60   1 
TALIGN T0030 0   42   52 2SN3 - 0      45      55     0.60   1 
TALIGN T0030 0   55   64 2SN3 - 0      56      65     0.60   1 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 69
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:   69  Type: P today Check: 100 ..
REMARK Name:           T0030 Len:   69 Check: 100  Weight: 1.00
REMARK Name:            2sn3 Len:   69 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0030  ETVESCLAKP HTENSFTNVW KDDKTLDRYA NYEGCLWNAT GVVVCTGDET 
REMARK        2sn3  ..KEGYLVKK SDGCKYGCL. KLGENEGCDT ECKAKNQGGS .YGYCYAFAC 
REMARK              51                   69
REMARK       T0030  QCYG..TWVP IGLAIPEN.
REMARK        2sn3  WCEGLPESTP TYPLPNKSC
TALIGN T0030 0    3   19 2SN3 - 0       1      17     0.40   2 
TALIGN T0030 0   21   40 2SN3 - 0      18      37     0.40   2 
TALIGN T0030 0   42   54 2SN3 - 0      38      50     0.40   2 
TALIGN T0030 0   55   66 2SN3 - 0      53      64     0.40   2 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 66
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:   66  Type: P today Check: 100 ..
REMARK Name:           T0030 Len:   66 Check: 100  Weight: 1.00
REMARK Name:            3ebx Len:   66 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0030  ETVESCLAKP HTENSFTNVW KDDKTLDRYA NYEGCLWNAT GVVVCTGDET 
REMARK        3ebx  RICFNHQSSQ PQTTKTCSPG ESSCYHKQWS DFRGTIIERG CGCPTVKPGI 
REMARK              51                66
REMARK       T0030  QCYGTWVPIG LAIPEN
REMARK        3ebx  KLSCCESEVC NN....
TALIGN T0030 0    1   62 3EBX - 0       1      62     0.60   1 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 68
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:   68  Type: P today Check: 100 ..
REMARK Name:           T0030 Len:   68 Check: 100  Weight: 1.00
REMARK Name:            3ebx Len:   68 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0030  ETVESCLAKP HTENSFTNVW KDDKTLDRYA NYEGCLWNAT GVVVCTGDET 
REMARK        3ebx  ...RICFN.H QSSQPQTT.. KTCSPGESSC YHKQWSDFRG TIIERGCGCP 
REMARK              51                  68
REMARK       T0030  QCYGTWVPIG LAIPEN..
REMARK        3ebx  TVKPGIKLSC CESEVCNN
TALIGN T0030 0    4    8 3EBX - 0       1       5     0.40   2 
TALIGN T0030 0   10   18 3EBX - 0       6      14     0.40   2 
TALIGN T0030 0   21   66 3EBX - 0      15      60     0.40   2 



