



PFRMAT FRV1
REMARK ========================================================================
AUTHOR Willie Taylor and Robin Munro,
AUTHOR Division of Mathematical Biology,
AUTHOR National Institute for Medical Research,
AUTHOR The Ridgeway, Mill Hill, London NW7 1AA, U.K.
AUTHOR w_taylor@nimr.mrc.ac.uk 
AUTHOR r-munro@nimr.mrc.ac.uk 
AUTHOR Tel. +44-181-959-3666 (ext.2298), FAX +44-181-913-8545
REMARK ========================================================================
REMARK Threading results for the target T0038, compared against a
REMARK Database containing 319 Structures (extended UCLA benchmark set).
REMARK 
REMARK ========================================================================
REMARK T0038 CBDN1  
REMARK T0038 CBDN1 from Cellulomonas fimi, 152a.a.
REMARK T0038 Threading target T0038
SEQRES T0038 ASPIGEGTFDDGPEGWVAYGTDGPLDTSTGALCVAVPAGSAQYGVGVVLN
SEQRES T0038 GVAIEEGTTYTLRYTATASTDVTVRALVGQNGAPYGTVLDTSPALTSEPR
SEQRES T0038 QVTETFTASATYPATPAADDPEGQIAFQLGGFSADAWTLCLDDVALDSEV
SEQRES T0038 EL
REMARK ========================================================================
REMARK
REMARK  
REMARK 
REMARK   
REMARK      ....p--- USER>>P1;GUN1_STRRE:90
REMARK      ..p-b--- USER>>P1;THFENDOGLU:162
REMARK      p-b----- USER>>P1;MXEGLBG:180
REMARK      b-p----- USER>>P1;GUNC_CELFI:241
REMARK      ..b----- USER>>t0038
REMARK 158
REMARK      ......p- USER>>P1;A36910:115
REMARK      ..p---b- USER>>P1;XYNA_RUMFL:113
REMARK      p-b----- USER>>P1;XYNC_FIBSU:400
REMARK      |.....p- USER>>1xnb :69
REMARK      b-p---b- USER>>P1;XYNB_STRLI:119
REMARK      ..b----- USER>>P1;XYNC_ASPAK:97
REMARK 
REMARK 
REMARK block 0 = 11 seqs
REMARK *USER>>P1;GUN1_STRRE:90 :       CELLULASE 1 PRECURSOR (EC 3.2.1.4) (ENDOGLUCANASE) (ENDO-1,4-BETA- GLUCANASE) (AVICELASE). - STREPTOMYCES RETICULI.*USER>>P1;THFENDOGLU:162 :      THFENDOGLU NID: g310896 - Thermomonospora fusca (strain YX) DNA.
REMARK *USER>>P1;MXEGLBG:180 : MXEGLBG NID: g895874 - Myxococcus xanthus.
REMARK *USER>>P1;GUNC_CELFI:241 :      ENDOGLUCANASE C PRECURSOR (EC 3.2.1.4) (ENDO-1,4-BETA-GLUCANASE) (CELLULASE). - CELLULOMONAS FIMI.
REMARK *USER>>T0038 :  CBDN1 from Cellulomonas fimi, 152a.a.
REMARK *USER>>P1;A36910:115 :  xylanase, beta(1,3-1,4)-glucanase - Ruminococcus flavefaciens
REMARK *USER>>P1;XYNA_RUMFL:113 :      BIFUNCTIONAL ENDO-1,4-BETA-XYLANASE XYLA PRECURSOR (EC 3.2.1.8). - RUMINOCOCCUS FLAVEFACIENS.
REMARK *USER>>P1;XYNC_FIBSU:400 :      ENDO-1,4-BETA-XYLANASE C PRECURSOR (EC 3.2.1.8) (XYLANASE C) (1,4-BETA-D-XYLAN XYLANOHYDROLASE C). - FIBROBACTER SUCCINOGENES (BACTEROIDES SUCCINOGENE
REMARK *USER>>1xnb :69 :       1XNB    1.49  1-185 (185)  4.3 56.2 (  4.9 54.1) 0  10.43 =  XYLANASE (ENDO-1,4-BETA-XYLANASE) (E.C.3.2.1.8) (BACILLUS CIRCULANS)
REMARK *USER>>P1;XYNB_STRLI:119 :      ENDO-1,4-BETA-XYLANASE B PRECURSOR (EC 3.2.1.8) (XYLANASE B) (1,4-BETA-D-XYLAN XYLANOHYDROLASE B). - STREPTOMYCES LIVIDANS.
REMARK *USER>>P1;XYNC_ASPAK:97 :       ENDO-1,4-BETA-XYLANASE C PRECURSOR (EC 3.2.1.8) (XYLANASE C) (1,4-BETA-D-XYLAN XYLANOHYDROLASE C). - ASPERGILLUS AWAMORI (VAR. KAWACHI).
REMARK 
REMARK               veqvrngtfdtttd pww tsnvtaglsdgrlcadvpggttn      rwdsaigqnditlv   kgetY
REMARK               vnqirngdfssgta pwwgteniqlnvtdgmlcvdvpggtvn      pwdviigqddipli   egesy
REMARK               telvsngtfnggtvspwwsgpntqsrvenarlrvdvgggtan      pwdaligqddiplv   ngray
REMARK                  lphtsfaeslgpwslygtsepvfad grmcvdlpggqgn      pwdaglvyngvpvg   egesY
REMARK               ASPIGEGTFDDGPEGWVAYGTDGPLDTSTGALCVAVPAGSAQ       YGVGVVLNGVAIE   EGTTY
REMARK         wemwnqnytgtvsmnp gagsftcswsg      ienflarmgknyddqkknykafgdivltydv  eytprgnsy
REMARK         yemwnqngqgqasmnp gagsftcswsn      ienflarmgknydsqkknykafgnivltydv  eytprgnsy
REMARK         yeiwyqg  gnnsmtfydngtykaswng      tndflarvgfkyd ekhtyeelgpidayykwskqgsaggyny
REMARK     astdywqnwtdgggivnavngsggnysvnwsn      tgnfvvgkgwttgspfrtinynagvwa         pngngy
REMARK qegtnngyyysfwtdsqgtvsmnmgsggqystswrn      tgnfvagkgwanggr rtvqys gsfn         psgnay
REMARK    rsaginyvqnyngnladftydesagtfsmywedg    vssdfvvglgwttgss naisysaeysa         sgsssy
REMARK 
REMARK             (v)
REMARK RFSFHAsgipeghvravvglavspy dtwqeas pvlteadgsysytftapv        dttqgqvafqvgg  
REMARK afsftasstvpvsiralvqepvepw ttqmder allgpeaetyefvftsnv        dwddaqvafqigg       
REMARK tlsftasasvsttvrvtvqlesapy tapldrq itldgtsrrftfpftstl        atqagqvtfqmgg       
REMARK VLSFTAsatpdmpvrvlvgegggay rtafeqgsapltgepatreyaftsnltfp  pdgdap gqvafhlgk       
REMARK TLRYTATASTDVTVRALVGQNGAPY GTVLDTSPA LTSEPRQVTETFTASATYPATPAADDPEGQIAFQLGGF      
REMARK mciYGWTRNPLMEYYivegwgdweppgndgvdnfgtttidgktykirksmrynqpsiegtkt fpqywsvrttsgsrnnt
REMARK mcvYGWTRNPLMEYYivegwgdwrppgndg evkgtvsangntydirktmrynqpsldgtat fpqywsvrqtsgsannq
REMARK igiYGWTVDPLVEYYivddwfn kpganllgqrkgeftvdgdtyeiwqntrvqqpsikgtqt fpqyfsvrksarsc   
REMARK ltlYGWTRSPLIEYYvvdswgtyrp  t  gtykgtvksdggtydiytttrynapsidgdrttftqywsvrqskr     
REMARK lalYGWTSNPLVEYYivdnwgtyrp  t  geykgtvtsdggtydiykttrvnkpsvegtrt fdqywsvrqskr     
REMARK lavYGWVNYPQAEYYivedygdynpcss  atslgtvysdgstyqvctdtrtnepsitgtst ftqyfsvrestr     
REMARK 
REMARK                           stdawrfcvddvsllggvpp   
REMARK                           sdepWTFCLDDVALlgraep   
REMARK                           ratgFSAFIDDISLttedgg   
REMARK                           agayefcisqvslttsatp   
REMARK                           SADAWTLCLDDVALDSEVEL   
REMARK tnymkdqvsvtkhfdawskagldmsgtlyevslniegyrsngsanv    
REMARK tnymkgtidvtkhfdawsaagldmsgtlyevslniegyrsngsanvk   
REMARK      ghiditahmkkweelgmkm gkmyeakvlveagggsgsfdvtyfk
REMARK ptgsnatitftnhvnawkshgmnlgsnwayqvmategyqssgssnvtvw 
REMARK tgg   tittgnhfdawaragmplgnfsyymimategyqssgtssinvgg
REMARK tsg   tvtvanhfnfwaqhgfg nsdfnyqvmaveawsgagsasvtiss
REMARK 
REMARK 
REMARK 
REMARK structure             sequence
REMARK 
REMARK                :
REMARK    1 G E     52.2    E qql P   3
REMARK    2 G E     51.9    E viv I   4
REMARK    3 I E     51.9    E rrslG   5
REMARK    4 V E **  40.4    E nnnpE   6
REMARK    5 N E     58.7 =    ggghG   7
REMARK    6 A E  *  55.1 *    tdttT   8
REMARK    7 V E  *  49.8 **   fffsF   9
REMARK    8 N E  *  46.9      dsnfD  10
REMARK    9 G    *   0.0      tsgaD  11
REMARK   10 S       44.5      tggeG  12
REMARK   11 G       44.6      tttsP  13
REMARK   12 G    *   0.0        vlE  14
REMARK   13 N    *  46.7      dasgG  15
REMARK   14 Y E  *  60.1 =    ppppW  16
REMARK   15 S E  *  61.4 **   wwwwV  17
REMARK   16 V E **  52.7 *    wwwsA  18
REMARK   17 N E  *  46.4       gslY  19
REMARK   18 W E **  26.3      ttgyG  20
REMARK                :
REMARK   19 S       45.6    E gnrvD  26
REMARK   20 N        0.0 *  E lvvfT  27
REMARK   21 T    *  40.7    E steaS  28
REMARK   22 G       51.2    E ddndT  29
REMARK   23 N E  *  60.5 *  E ggagG  30
REMARK   24 F E  *  67.5    E rmrrA  31
REMARK   25 V E **  71.2 ** E lllmL  32
REMARK   26 V E  *  60.2 *  E ccrcC  33
REMARK   27 G E  *  60.2 ** E avvvV  34
REMARK   28 K E  *  57.3 =  E ddddA  35
REMARK   29 G E **  56.9 ** E vvvlV  36
REMARK   30 W    *  41.4 =    ppgpP  37
REMARK   31 T       42.8 *    ggggA  38
REMARK   32 T       43.1 *=   ggggG  39
REMARK   33 G    *  40.0      tttqS  40
REMARK   34 S    *  43.6 *    tvagA  41
REMARK   35 P    *  46.1 =  E nnnnQ  42
REMARK   36 F       51.1    E rppp   43
REMARK   37 R    *  58.7 ** E wwwwY  44
REMARK   38 T E  *  56.6 =  E ddddG  45
REMARK   39 I E **  63.5 *  E svaaV  46
REMARK   40 N E  *  66.3    E ailgG  47
REMARK   41 Y E  *  63.1 ** E iiilV  48
REMARK   42 N E  *  51.3 *  E gggvV  49
REMARK   43 A E **  43.3    E qqqyL  50
REMARK   44 G       53.4    E nddnN  51
REMARK   45 V E     62.9    E dddgG  52
REMARK   46 W E **  64.2 ** E iiivV  53
REMARK   47 A E     61.7    E tpppA  54
REMARK   48 P E  *  56.2 ** E lllvI  55
REMARK   49 N       46.2 *  E vivgE  56
REMARK   50 G    *  44.5    E keneE  57
REMARK   51 N    *  46.9 *= E ggggG  58
REMARK   52 G E  *  54.5    E eereT  59
REMARK   53 Y E **  67.0    E tsasT  60
REMARK   54 L E **  70.2 ** E YyyYY  61
REMARK   55 T E  *  61.3    E RatVT  62
REMARK   56 L E  *  59.0 ** E FflLL  63
REMARK   57 Y E **  51.7 =  E SssSR  64
REMARK   58 G E  *  58.1 ** E FffFY  65
REMARK   59 W E  *  49.4 *    HttTT  66
REMARK   60 T E  *  40.2 **   AaaAA  67
REMARK                :
REMARK   61 R    *  37.1 *    pvvpT  71
REMARK   62 S       36.4    E epsdD  72
REMARK   63 P       46.1 *  E gvtmV  73
REMARK   64 L    *  48.6    E hstpT  74
REMARK   65 I E **  54.5 ** E vivvV  75
REMARK   66 E E **  48.1    E v  r   76
REMARK   67 Y E  *  67.7 =  E rrrvR  77
REMARK   68 Y E **  74.0 *  E aavlA  78
REMARK   69 V E  *  67.8 *  E vltvL  79
REMARK   70 V E **  56.7 ** E vvvgV  80
REMARK   71 D E  *  38.9    E gqqeG  81
REMARK   72 S E  *  39.6    E lelgQ  82
REMARK   73 W    *  24.1    E apegN  83
REMARK   74 G    *  36.6 *  E vvsgG  84
REMARK   75 T    *  38.0 *    seaaA  85
REMARK                :
REMARK   76 Y    *  39.1 *    ywyrY  87
REMARK   77 R E **  50.3      dtttG  88
REMARK   78 P E **  55.6 *  E ttaaT  89
REMARK   79 T E **  37.0    E wqpfV  90
REMARK   80 G E  *  48.9    E qmleL  91
REMARK   81 T E     48.6    E eddqD  92
REMARK   82 Y    *   0.0    E aergT  93
REMARK   83 K E  *  46.1      srqsS  94
REMARK   84 G E     54.7 *    paiaP  95
REMARK   85 T E  *  58.3      vltpA  96
REMARK   86 V E  *  55.3 ** E llllL  97
REMARK   87 K E  *  45.4      tgdtT  98
REMARK   88 S    *   0.0      epggS  99
REMARK                :
REMARK   89 D    *   0.0      daspP 101
REMARK   90 G       38.9      geraR 102
REMARK   91 G    *   0.0    E strtQ 103
REMARK   92 T E  *  54.4    E yyfrV 104
REMARK   93 Y E  *  56.9    E seteT 105
REMARK   94 D E **  70.0 *  E yffyE 106
REMARK   95 I E  *  73.1 *  E tvpaT 107
REMARK   96 Y E **  72.8 ** E ffffF 108
REMARK   97 T E  *  59.0 ** E ttttT 109
REMARK   98 T E  *  56.5      asssA 110
REMARK   99 T E  *  55.9      pntnS 111
REMARK  100 R E  *  54.2 **   vvllA 112
REMARK  101 Y       46.8         tT 113
REMARK  102 N       46.7         fY 114
REMARK  103 A    *   0.0         pP 115
REMARK  104 P E     49.0         pA 116
REMARK  105 S   **   0.0          T 117
REMARK  106 I    *   0.0    E     P 118
REMARK  107 D       46.7    E     A 119
REMARK  108 G       46.3    E    dA 120
REMARK  109 D       46.3    E ddagD 121
REMARK  110 R        0.0    E twtdD 122
REMARK  111 T E     54.8    E tdqaP 123
REMARK  112 T E  *  56.6    E qdapE 124
REMARK  113 F E  *  62.7 *  E gaggG 125
REMARK  114 T E  *  70.5 == E qqqqQ 126
REMARK  115 Q E **  84.0 ** E vvvvI 127
REMARK  116 Y E  *  76.9 ** E aataA 128
REMARK  117 W E **  70.0 ** E ffffF 129
REMARK  118 S E  *  54.4 =  E qqqhQ 130
REMARK  119 V E **  52.0 **   vimlL 131
REMARK  120 R E  *  35.8 *=   ggggG 132
REMARK        :
REMARK  134 N       11.3      ggg G 133
REMARK  135 W    *  10.5    E     F 134
REMARK  136 A E  *  13.5      ssrkS 135
REMARK  137 Y E  *  14.8 *    tdaaA 136
REMARK  138 Q E  *  17.5      detgD 137
REMARK  139 V E  *  23.6 *  E apgaA 138
REMARK  140 M E **  27.4 *  E wWFyW 139
REMARK  141 A E **  25.7    E rTSeT 140
REMARK  142 T E **  30.6 ** E fFAfL 141
REMARK  143 E E **  25.7 *  E cCFcC 142
REMARK  144 G E  *  18.9 ** E vLIiL 143
REMARK        :
REMARK  149 G E     18.5 =  E dDDsD 144
REMARK  150 S E  *  23.2 =  E dDDqD 145
REMARK  151 S E **  28.3 ** E vVIvV 146
REMARK  152 N E  *  28.1    E sASsA 147
REMARK  153 V E **  26.5 ** E lLLlL 148
REMARK  154 T E  *  20.2    E llttD 149
REMARK  155 V E **  14.2      ggttS 150
REMARK  156 W E     17.7      gresE 151
REMARK 
REMARK pcthit =    inf   Drawing structure in pack.out
REMARK  score = 6131.628418
REMARK 
REMARK NB - a higher score was obtained for 4GCR (GAMMA-B CRYSTALLIN)
REMARK  score = 6621.820312,  however this was discounted due to the
REMARK  poor positions in the structure for the predicted disulphide
REMARK  bonds, and the lack of duplication in the target sequence to 
REMARK  fit with the double domained gamma crystallin.
REMARK 
REMARK 
REMARK 
REMARK 
REMARK          5        10        15        20        25        30        35        40
REMARK  A S P I G E G T F D D G P E G W V A Y G T D G P L D T S T G A L C V A V P A G S 
REMARK     13--------------------------------30          31----------------------------
REMARK
REMARK         45        50        55        60        65        70        75        80
REMARK  A Q Y G V G V V L N G V A I E E G T T Y T L R Y T A T A S T D V T V R A L V G Q 
REMARK  -4749--------------------------------------------72      73------7779---------- 
REMARK
REMARK         85        90        95       100       105       110       115       120
REMARK  N G A P Y G T V L D T S P A L T S E P R Q V T E T F T A S A T Y P A T P A A D D 
REMARK  ---87  88----------------------00  01------------------------------------------
REMARK
REMARK        125       130       135       140       145       150       155       160
REMARK  P E G Q I A F Q L G G F S A D A W T L C L D D V A L D S E V E L    
REMARK  -----------------3263------------------7378------------85
REMARK
REMARK ========================================================================
TSCORE T0038 0  1.0     1XNB - 0
REMARK ========================================================================
TALIGN T0038 0    3   20        1XNB - 0         13   30        1.0     1
TALIGN T0038 0   26   42        1XNB - 0         31   47        1.0     1
TALIGN T0038 0   43   66        1XNB - 0         49   72        1.0     1
TALIGN T0038 0   70   74        1XNB - 0         73   77        1.0     1
TALIGN T0038 0   75   83        1XNB - 0         79   87        1.0     1
TALIGN T0038 0   85   97        1XNB - 0         88  100        1.0     1
TALIGN T0038 0   99  130        1XNB - 0        101  132        1.0     1
TALIGN T0038 0  131  141        1XNB - 0        163  173        1.0     1
TALIGN T0038 0  142  149        1XNB - 0        178  185        1.0     1
REMARK ========================================================================
  


