


PFRMAT FRV1
REMARK +++++++++++++++++++++++++++++++++++++++++++++++++++++
AUTHOR 1017-7609-1967 ADAM GODZIK, LESZEK RYCHLEWSKI, BAOHONG ZHANG
AUTHOR 1017-7609-1967 LUKASZ JAROSZEWSKI, KRZYSZTOF PAWLOWSKI
AUTHOR 1017-7609-1967   WITH SOME COOPERATION WITH BORIS REVA
AUTHOR 1017-7609-1967 THE SCRIPPS RESEARCH INSITITUTE
REMARK +++++++++++++++++++++++++++++++++++++++++++++++++++++
REMARK PREDICTIONS ARE BASED ON AN EXTENSION OF THE METHOD
REMARK ORIGINALLY DESCRIBED IN JMB, 227:227-238 (1992)
REMARK MODIFICATIONS INCLUDE:
REMARK                        ADDITIONAL LOCAL ENERGY TERMS
REMARK                        MODIFIED GAP HANDLING
REMARK ALL MODIFICATIONS ARE DESCRIBED IN AN UPCOMING PUBLICATION
REMARK L.JAROSZEWSKI & A.GODZIK "EVALUATION OF THREADING ALIGNMENTS"
REMARK AVAILABLE UPON REQUEST
REMARK +++++++++++++++++++++++++++++++++++++++++++++++++++++++
SEQRES T0038 ASPIGEGTFDDGPEGWVAYGTDGPLDTSTGALCVAVPAGSAQYGVGVVLNGVAIEEGTTYTLRYTATAST
SEQRES T0038 DVTVRALVGQNGAPYGTVLDTSPALTSEPRQVTETFTASATYPATPAADDPEGQIAFQLGGFSADAWTLC
SEQRES T0038 LDDVALDSEVEL
REMARK +++++++++++++++++++++++++++++++++++++++++++++++++++++++
TSCORE T0038 0  0.6     1LEM A 0
TSCORE T0038 0  0.0     2APR - 0
TSCORE T0038 0  0.0     ATIM - 0
TSCORE T0038 0  0.0     1HRI 2 0
TSCORE T0038 0  0.0     1FNR - 0
TSCORE T0038 0  0.0     ALAL - 0
TSCORE T0038 0  0.0     1SRE - 0
TSCORE T0038 0  0.4     2MCM - 0
TSCORE T0038 0  0.0     1AAJ - 0
TSCORE T0038 0  0.0     1C2R A 0
TSCORE T0038 0  0.0     1TIE - 0
TSCORE T0038 0  0.0     1NCO A 0
TSCORE T0038 0  0.0     1PTS A 0
TSCORE T0038 0  0.0     1MYP A 0
TSCORE T0038 0  0.0     2POR - 0
TSCORE T0038 0  0.0     ATRD - 0
TSCORE T0038 0  0.0     1CRY - 0
TSCORE T0038 0  0.0     1BRA - 0
TSCORE T0038 0  0.0     1ADS - 0
TSCORE T0038 0  0.0     1LLA - 0
TSCORE T0038 0  0.0     1PAZ - 0
TSCORE T0038 0  0.0     1HTP - 0
TSCORE T0038 0  0.0     1CAA - 0
TSCORE T0038 0  0.0     1GAL - 0
TSCORE T0038 0  0.0     1LVL - 0
TSCORE T0038 0  0.0     7CAT A 0
TSCORE T0038 0  0.0     1ARB - 0
TSCORE T0038 0  0.0     1BHA - 0
TSCORE T0038 0  0.0     1BAB A 0
TSCORE T0038 0  0.0     1EGF - 0
TSCORE T0038 0  0.0     1FKB - 0
TSCORE T0038 0  0.0     1IPD - 0
TSCORE T0038 0  0.0     HPSS - 0
TSCORE T0038 0  0.0     1AAK - 0
TSCORE T0038 0  0.0     1MHU - 0
TSCORE T0038 0  0.0     1HGD B 0
TSCORE T0038 0  0.0     1LPT - 0
TSCORE T0038 0  0.0     1NTR - 0
TSCORE T0038 0  0.0     2CHE - 0
TSCORE T0038 0  0.0     1NIP A 0
TSCORE T0038 0  0.0     AHRH - 0
TSCORE T0038 0  0.0     1BMV 2 0
TSCORE T0038 0  0.0     1TYP A 0
TSCORE T0038 0  0.0     3LAD A 0
TSCORE T0038 0  0.0     HFBJ - 0
TSCORE T0038 0  0.0     1GOF - 0
TSCORE T0038 0  0.0     1LTE - 0
TSCORE T0038 0  0.0     ALTA - 0
TSCORE T0038 0  0.0     1TFI - 0
TSCORE T0038 0  0.0     1HMY - 0
TSCORE T0038 0  0.0     1COB A 0
TSCORE T0038 0  0.0     2PMG A 0
TSCORE T0038 0  0.0     1CLL - 0
TSCORE T0038 0  0.0     1PBA - 0
TSCORE T0038 0  0.0     1FRR A 0
TSCORE T0038 0  0.0     1HLC A 0
TSCORE T0038 0  0.0     1HCD - 0
TSCORE T0038 0  0.0     1PPA - 0
TSCORE T0038 0  0.0     6RXN - 0
TSCORE T0038 0  0.0     1FBC A 0
TSCORE T0038 0  0.0     1ATX - 0
TSCORE T0038 0  0.0     2C2C - 0
TSCORE T0038 0  0.0     3DFR - 0
TSCORE T0038 0  0.0     1BBH A 0
TSCORE T0038 0  0.0     1MJC - 0
TSCORE T0038 0  0.0     1COY - 0
TSCORE T0038 0  0.0     BMON - 0
TSCORE T0038 0  0.0     1YEA - 0
TSCORE T0038 0  0.0     1GDH A 0
TSCORE T0038 0  0.0     2BBK H 0
TSCORE T0038 0  0.0     1JHL H 0
TSCORE T0038 0  0.0     2UCE - 0
TSCORE T0038 0  0.0     1MIO A 0
TSCORE T0038 0  0.0     1AFN A 0
TSCORE T0038 0  0.0     1HIC - 0
TSCORE T0038 0  0.0     1ABM A 0
TSCORE T0038 0  0.0     1AKE A 0
TSCORE T0038 0  0.0     1DHF A 0
TSCORE T0038 0  0.0     2MS2 A 0
TSCORE T0038 0  0.0     1PBA - 0
TSCORE T0038 0  0.0     1FCS - 0
TSCORE T0038 0  0.0     1GLT - 0
TSCORE T0038 0  0.0     3TGL - 0
TSCORE T0038 0  0.0     2BPA 2 0
TSCORE T0038 0  0.0     1EDB - 0
TSCORE T0038 0  0.0     2CSC - 0
TSCORE T0038 0  0.0     2LHB - 0
TSCORE T0038 0  0.0     ALYA - 0
TSCORE T0038 0  0.0     3AAH B 0
TSCORE T0038 0  0.0     BAAI - 0
TSCORE T0038 0  0.0     2MEC - 0
TSCORE T0038 0  0.0     1ASA - 0
TSCORE T0038 0  0.0     1CBX - 0
TSCORE T0038 0  0.0     ASC2 - 0
TSCORE T0038 0  0.0     ATPK - 0
TSCORE T0038 0  0.0     1CGP A 0
TSCORE T0038 0  0.0     1MED - 0
TSCORE T0038 0  0.0     1LCT - 0
TSCORE T0038 0  0.0     1LEC - 0
TSCORE T0038 0  0.0     1BAA - 0
TSCORE T0038 0  0.0     1BMV 1 0
TSCORE T0038 0  0.0     1TFG - 0
TSCORE T0038 0  0.0     BHSA - 0
TSCORE T0038 0  0.0     2SIC I 0
TSCORE T0038 0  0.0     1HRI 3 0
TSCORE T0038 0  0.0     1ATR - 0
TSCORE T0038 0  0.0     1OMA - 0
TSCORE T0038 0  0.0     1YPI A 0
TSCORE T0038 0  0.0     1BAB B 0
TSCORE T0038 0  0.0     BVAA - 0
TSCORE T0038 0  0.0     1BLL E 0
TSCORE T0038 0  0.0     1PUT - 0
TSCORE T0038 0  0.0     1HKS - 0
TSCORE T0038 0  0.0     1CDG - 0
TSCORE T0038 0  0.0     1PNJ - 0
TSCORE T0038 0  0.0     1CGM E 0
TSCORE T0038 0  0.0     1PLC - 0
TSCORE T0038 0  0.0     2PKC - 0
TSCORE T0038 0  0.0     1CMA A 0
TSCORE T0038 0  0.0     1MOL - 0
TSCORE T0038 0  0.0     1DMB - 0
TSCORE T0038 0  0.0     1PK2 - 0
TSCORE T0038 0  0.0     1LBA - 0
TSCORE T0038 0  0.0     1AAF - 0
TSCORE T0038 0  0.0     2POL A 0
TSCORE T0038 0  0.0     1GLA G 0
TSCORE T0038 0  0.0     4MEC - 0
TSCORE T0038 0  0.0     1HCR A 0
TSCORE T0038 0  0.0     1KDU - 0
TSCORE T0038 0  0.0     2BPA 3 0
TSCORE T0038 0  0.0     1PBX A 0
TSCORE T0038 0  0.0     1TEC E 0
TSCORE T0038 0  0.0     1PP2 R 0
TSCORE T0038 0  0.0     1CCD - 0
TSCORE T0038 0  0.0     1RHD - 0
TSCORE T0038 0  0.0     1RIL - 0
TSCORE T0038 0  0.0     4TMF - 0
TSCORE T0038 0  0.0     7API A 0
TSCORE T0038 0  0.0     1PCP - 0
TSCORE T0038 0  0.0     1PHH - 0
TSCORE T0038 0  0.0     1HSA A 0
TSCORE T0038 0  0.0     AMDH - 0
TSCORE T0038 0  0.0     1RAA A 0
TSCORE T0038 0  0.0     AVAA - 0
TSCORE T0038 0  0.0     1ZAA C 0
TSCORE T0038 0  0.0     1HC1 - 0
TSCORE T0038 0  0.0     1MEC - 0
TSCORE T0038 0  0.0     1GLU A 0
TSCORE T0038 0  0.0     1RES - 0
TSCORE T0038 0  0.0     1CDB - 0
TSCORE T0038 0  0.0     1CCR - 0
TSCORE T0038 0  0.0     1PPT - 0
TSCORE T0038 0  0.0     1BBP A 0
TSCORE T0038 0  0.0     LFDL - 0
TSCORE T0038 0  0.0     1PNH - 0
TSCORE T0038 0  0.0     2MRB - 0
TSCORE T0038 0  0.0     1ADN - 0
TSCORE T0038 0  0.0     1REC - 0
TSCORE T0038 0  0.0     4CPA - 0
TSCORE T0038 0  0.0     1AAZ A 0
TSCORE T0038 0  0.0     ATRE - 0
TSCORE T0038 0  0.0     CNCP - 0
TSCORE T0038 0  0.0     1PRC M 0
TSCORE T0038 0  0.0     2HPP P 0
TSCORE T0038 0  0.0     1APA - 0
TSCORE T0038 0  0.0     1BNH - 0
TSCORE T0038 0  0.0     1DOG - 0
TSCORE T0038 0  0.0     1AB2 - 0
TSCORE T0038 0  0.0     1MPP - 0
TSCORE T0038 0  0.0     1PFK A 0
TSCORE T0038 0  0.0     1POW A 0
TSCORE T0038 0  0.0     BBPH - 0
TSCORE T0038 0  0.0     1GD1 O 0
TSCORE T0038 0  0.0     1LDB - 0
TSCORE T0038 0  0.0     1GRA - 0
TSCORE T0038 0  0.0     1HIB - 0
TSCORE T0038 0  0.0     CNCP - 0
TSCORE T0038 0  0.0     CYSA - 0
TSCORE T0038 0  0.0     ETYA - 0
TSCORE T0038 0  0.0     3LMB - 0
TSCORE T0038 0  0.0     1BOV A 0
TSCORE T0038 0  0.0     1MVP A 0
TSCORE T0038 0  0.0     LABI - 0
TSCORE T0038 0  0.0     1LFB - 0
TSCORE T0038 0  0.0     AATN - 0
TSCORE T0038 0  0.0     1GUH A 0
TSCORE T0038 0  0.0     AMON - 0
TSCORE T0038 0  0.0     1CHM A 0
TSCORE T0038 0  0.0     1DFN A 0
TSCORE T0038 0  0.0     ALPR - 0
TSCORE T0038 0  0.0     ANSB - 0
TSCORE T0038 0  0.0     1FC1 A 0
TSCORE T0038 0  0.0     2TBV A 0
TSCORE T0038 0  0.0     132L - 0
TSCORE T0038 0  0.0     1CP4 - 0
TSCORE T0038 0  0.0     1RIP - 0
TSCORE T0038 0  0.0     1ACX - 0
TSCORE T0038 0  0.0     1VSG A 0
TSCORE T0038 0  0.0     1SBP - 0
TSCORE T0038 0  0.0     1SHG - 0
TSCORE T0038 0  0.0     1THY - 0
TSCORE T0038 0  0.0     1UTG - 0
TSCORE T0038 0  0.0     2MHR - 0
TSCORE T0038 0  0.0     2REB - 0
TSCORE T0038 0  0.0     AAAT - 0
TSCORE T0038 0  0.0     BDPH - 0
TSCORE T0038 0  0.0     1PYA B 0
TSCORE T0038 0  0.0     1ABI H 0
TSCORE T0038 0  0.0     4SGB I 0
TSCORE T0038 0  0.0     1PRC L 0
TSCORE T0038 0  0.0     LRUB - 0
TSCORE T0038 0  0.0     1PYP - 0
TSCORE T0038 0  0.0     1CSG A 0
TSCORE T0038 0  0.0     1RPB - 0
TSCORE T0038 0  0.0     ALCC - 0
TSCORE T0038 0  0.0     1AOZ A 0
TSCORE T0038 0  0.0     AECA - 0
TSCORE T0038 0  0.0     1ITH A 0
TSCORE T0038 0  0.0     AMDS - 0
TSCORE T0038 0  0.0     1HNE E 0
TSCORE T0038 0  0.0     1ULA - 0
TSCORE T0038 0  0.0     AAT1 - 0
TSCORE T0038 0  0.0     AGSR - 0
REMARK +++++++++++++++++++++++++++++++++++++++++++++++++++++++
TALIGN T0038 0    3    6        2MCM - 0          1    4      1.0    1
TALIGN T0038 0    8   11        2MCM - 0          5    8      1.0    1
TALIGN T0038 0   13   15        2MCM - 0          9   11      1.0    1
TALIGN T0038 0   17   17        2MCM - 0         12   12      1.0    1
TALIGN T0038 0   28   33        2MCM - 0         13   18      1.0    1
TALIGN T0038 0   34   36        2MCM - 0         20   22      1.0    1
TALIGN T0038 0   37   43        2MCM - 0         26   32      1.0    1
TALIGN T0038 0   45   47        2MCM - 0         33   35      1.0    1
TALIGN T0038 0   48   49        2MCM - 0         37   38      1.0    1
TALIGN T0038 0   52   54        2MCM - 0         39   41      1.0    1
TALIGN T0038 0   55   57        2MCM - 0         43   45      1.0    1
TALIGN T0038 0   58   68        2MCM - 0         49   59      1.0    1
TALIGN T0038 0   69   78        2MCM - 0         63   72      1.0    1
TALIGN T0038 0   79   89        2MCM - 0         77   87      1.0    1
TALIGN T0038 0  102  102        2MCM - 0         88   88      1.0    1
TALIGN T0038 0  103  106        2MCM - 0         90   93      1.0    1
TALIGN T0038 0  126  127        2MCM - 0         94   95      1.0    1
TALIGN T0038 0  131  144        2MCM - 0         96  109      1.0    1
TALIGN T0038 0  149  151        2MCM - 0        110  112      1.0    1
REMARK +++++++++++++++++++++++++++++++++++++++++++++++++++++++
TALIGN T0038 0    1   12        1LEM A 0         18   29      1.0    1
TALIGN T0038 0   13   17        1LEM A 0         40   44      1.0    1
TALIGN T0038 0   18   18        1LEM A 0         52   52      1.0    1
TALIGN T0038 0   19   19        1LEM A 0         55   55      1.0    1
TALIGN T0038 0   21   28        1LEM A 0         56   63      1.0    1
TALIGN T0038 0   32   33        1LEM A 0         64   65      1.0    1
TALIGN T0038 0   34   37        1LEM A 0         67   70      1.0    1
TALIGN T0038 0   40   41        1LEM A 0         71   72      1.0    1
TALIGN T0038 0   42   45        1LEM A 0         80   83      1.0    1
TALIGN T0038 0   47   48        1LEM A 0         84   85      1.0    1
TALIGN T0038 0   52   56        1LEM A 0         86   90      1.0    1
TALIGN T0038 0   57   59        1LEM A 0         99  101      1.0    1
TALIGN T0038 0   60   74        1LEM A 0        103  117      1.0    1
TALIGN T0038 0   78   78        1LEM A 0        118  118      1.0    1
TALIGN T0038 0   87   88        1LEM A 0        119  120      1.0    1
TALIGN T0038 0   89  102        1LEM A 0        122  135      1.0    1
TALIGN T0038 0  105  106        1LEM A 0        136  137      1.0    1
TALIGN T0038 0  107  118        1LEM A 0        140  151      1.0    1
TALIGN T0038 0  119  125        1LEM A 0        153  159      1.0    1
TALIGN T0038 0  126  128        1LEM A 0        161  163      1.0    1
TALIGN T0038 0  132  132        1LEM A 0        164  164      1.0    1
TALIGN T0038 0  133  141        1LEM A 0        166  174      1.0    1
TALIGN T0038 0  144  145        1LEM A 0        175  176      1.0    1
TALIGN T0038 0  150  152        1LEM A 0        177  179      1.0    1
REMARK +++++++++++++++++++++++++++++++++++++++++++++++++++++++


