


PFRMAT FRV1
AUTHOR 6776-3217-5205 M J E Sternberg
AUTHOR 6776-3217-5205 Imperial Cancer Research Fund
AUTHOR 6776-3217-5205 m.sternberg@icrf.icnet.uk
AUTHOR 6776-3217-5205 Details of all workers see below
REMARK ======================================================================
REMARK Threading results from FOLDFIT:
REMARK 
REMARK Work by Michael J E Sternberg (1), Paul A Bates (1), Andrew Lyall (2)
REMARK Robert B Russell (1), Mansoor A S Saqi (2) and Roger Sayle (2)
REMARK (1) Biomolecular Modelling Laboratory
REMARK Imperial Cancer Research Fund
REMARK Lincoln Inn Fields, London, WC2A 3PX, UK
REMARK Tel +44 - 171 - 269- 3565
REMARK Fax +44 - 171 - 269 - 3479
REMARK URL http://bonsai.lif.icnet.uk
REMARK E-mail m.sternberg@icrf.icnet.uk
REMARK E-mail p.bates@icrf.icnet.uk 
REMARK E-mail r.russell@icrf.icnet.uk
REMARK (2) Bioinformatics Group
REMARK Glaxo Medicines Research Centre
REMARK Gunnels Wood Road
REMARK Stevenage, Herts, SG1 2NY, UK
REMARK Tel +44 -1438 - 745745
REMARK Tel +44 -1438 - 763082
REMARK E-mail al28044@ggr.co.uk
REMARK E-mail mass15599@ggr.co.uk
REMARK E-mail ras32425@ggr.co.uk
REMARK ===========================================================================
REMARK 
REMARK                             FOLDFIT
REMARK                             =======
REMARK The program was jointly and equally developed by the above two groups.
REMARK The program matches the (1) sequence, (2) predicted secondary structure
REMARK and (3) predicted burial of the unknown sequence against a database of 
REMARK known structures detailing (1) sequence, (2) actual and predicted secondary 
REMARK structure and (3) actual and predicted burial.  The matches are scored by 
REMARK matrices empirically derived from comparison of analogous and distantly 
REMARK homologous protein folds.  Searching is by a type I dynamic programming 
REMARK algorithm with afine secondary-structure dependant gap penalties.
REMARK 
REMARK ===========================================================================
REMARK ======================================================================
REMARK T0042 study
REMARK ======================================================================
REMARK
REMARK (1) A consensus secondary structure assignment from multiply
REMARK aligned homologous sequences was made using results of DSC (King
REMARK & Sternberg, T0042 CASP Submission) PHD (Rost & Sander), SOPMA
REMARK (Geourjon & Deleage), NNPREDICT (Kneller, Harris & Cohen), 
REMARK SSPRED (Mehta, Heringa & Argos) together with visual inspection.
REMARK A consensus prediction of secondary structure, together with
REMARK accessibilities from PHD was used as input to FOLDFIT.
REMARK
REMARK (2) T0042 was scanned by FOLDFIT and the rank order of the PDB codes 
REMARK matched by FOLDFIT are listed below in decreasing order of probability.
REMARK 
REMARK (3) Since three distance restraints were available from disulphide
REMARK bonding data, we made use of these in a post-processing fashion with 
REMARK the results of FOLDFIT.  For each of the top 100 scoring folds 
REMARK identified above, 20 sub-optimal alignments were generated using 
REMARK the method of Saqi & Sternberg (J.Mol.Biol. 219, 727-732, 1991).  
REMARK These alignments were then *filtered* using methods similar to those
REMARK described in Russell et al (J. Mol. Biol. 259, 349-365,1996) were 
REMARK then applied to remove alignments not satisfying disulphide (constrained
REMARK to have C-alpha carbons within 9.0 angstroms and C-beta carbons within 
REMARK 7.0 angstroms).  Leniency values of 4.0 angstroms on each distance and 
REMARK +/- 4 residues on each sequence position were used to account for shifts 
REMARK in the orientation of secondary structures (expected in analogous protein 
REMARK structures) and possible inaccuracies in the alignment.  Starting with 
REMARK 2 000 alignments from 100 folds, the restraints left only 222 alignments 
REMARK from 53 folds.  The first 53 folds listed below are filtered folds ranked 
REMARK according to the FOLDFIT score The next 47 folds are those within the 
REMARK initial top 100 removed by the filters.  The next 541 folds are those 
REMARK that were not considered (i.e. not in the initial top 100) though 
REMARK still ranked according to the FOLDFIT score.
REMARK 
REMARK (4) The top ten scoring PDB entries passing the filters consists of
REMARK a variety of all alpha folds, and the top scoring fold comes from
REMARK uteroglobin (1UTG).  Interestingly, uteroglobins show some functional
REMARK similarity to the NK-lysin/Saposin/SAPLIP family of proteins in that
REMARK they bind lipids and form dimers.  Utereoglobin was thus given the
REMARK highest probability; the remaining folds were assigned probabilities 
REMARK to reflect the FOLDFIT ranking.
REMARK 
REMARK (5) For each matched fold, the top two scoring alignments satisfying
REMARK the distance restraints above were submitted.  The probabilities   
REMARK for the alignments were chosen subjectively.  
REMARK
REMARK =======================================================================
REMARK =======================================================================
REMARK
REMARK The sequence was not split into domains
REMARK 
SEQRES T0042 GYFCESCRKIIQKLEDMVGPQPNEDTVTQAASQVCDKLKILRGLCKKIMRSFLR
SEQRES T0042 RISWDILTGKKPQAICVDIKICKE
REMARK
REMARK =======================================================================
REMARK
REMARK The folds below survied the filters and
REMARK  are ranked according to FOLDFIT scores
REMARK 
TSCORE T0042 0 0.35 1UTG - 0 
TSCORE T0042 0 0.25 2CCY A 0 
TSCORE T0042 0 0.12 5PAL - 0 
TSCORE T0042 0 0.11 1CYI - 0 
TSCORE T0042 0 0.00 1ECM A 0 
TSCORE T0042 0 0.00 451C - 0 
TSCORE T0042 0 0.00 1YCC - 0 
TSCORE T0042 0 0.09 1HRY A 0 
TSCORE T0042 0 0.08 1NEQ - 0 
TSCORE T0042 0 0.00 2MHR - 0 
TSCORE T0042 0 0.00 1RCB - 0 
TSCORE T0042 0 0.00 1LEA - 0 
TSCORE T0042 0 0.00 1GMF A 0 
TSCORE T0042 0 0.00 1AEP - 0 
TSCORE T0042 0 0.00 3ITR - 0 
TSCORE T0042 0 0.00 1ECO - 0 
TSCORE T0042 0 0.00 1CC5 - 0 
TSCORE T0042 0 0.00 1CMB A 0 
TSCORE T0042 0 0.00 2LIG A 0 
TSCORE T0042 0 0.00 1RFB A 0 
TSCORE T0042 0 0.00 1HST A 0 
TSCORE T0042 0 0.00 1LFB - 0 
TSCORE T0042 0 0.00 1ASH - 0 
TSCORE T0042 0 0.00 1COO - 0 
TSCORE T0042 0 0.00 2IHL - 0 
TSCORE T0042 0 0.00 1HUL A 0 
TSCORE T0042 0 0.00 1POA - 0 
TSCORE T0042 0 0.00 1TNS - 0 
TSCORE T0042 0 0.00 1BGC - 0 
TSCORE T0042 0 0.00 3SDH A 0 
TSCORE T0042 0 0.00 1HLB - 0 
TSCORE T0042 0 0.00 1TIG - 0 
TSCORE T0042 0 0.00 1ICE B 0 
TSCORE T0042 0 0.00 1ABA - 0 
TSCORE T0042 0 0.00 2MSB A 0 
TSCORE T0042 0 0.00 4FX2 - 0 
TSCORE T0042 0 0.00 1AYA A 0 
TSCORE T0042 0 0.00 3RUB S 0 
TSCORE T0042 0 0.00 1SRA - 0 
TSCORE T0042 0 0.00 1CXC - 0 
TSCORE T0042 0 0.00 1OVI - 0 
TSCORE T0042 0 0.00 2END - 0 
TSCORE T0042 0 0.00 1HBG - 0 
TSCORE T0042 0 0.00 1ITH A 0 
TSCORE T0042 0 0.00 1RND - 0 
TSCORE T0042 0 0.00 256B A 0 
TSCORE T0042 0 0.00 1GDI - 0 
TSCORE T0042 0 0.00 1GRJ - 0 
TSCORE T0042 0 0.00 1AAK - 0 
TSCORE T0042 0 0.00 1OFV - 0 
TSCORE T0042 0 0.00 1FCD C 0 
TSCORE T0042 0 0.00 1PHR - 0 
REMARK
REMARK The folds that followed were in the top 100
REMARK  scoring folds initially, but were removed
REMARK  by the filters
REMARK
TSCORE T0042 0 0.00 1APL C 0 
TSCORE T0042 0 0.00 1ASU - 0 
TSCORE T0042 0 0.00 1BAB A 0 
TSCORE T0042 0 0.00 1BBH A 0 
TSCORE T0042 0 0.00 1CGO - 0 
TSCORE T0042 0 0.00 1CPC A 0 
TSCORE T0042 0 0.00 1CPC L 0 
TSCORE T0042 0 0.00 1CTF - 0 
TSCORE T0042 0 0.00 1DCH A 0 
TSCORE T0042 0 0.00 1ENH - 0 
TSCORE T0042 0 0.00 1FCS - 0 
TSCORE T0042 0 0.00 1FIA B 0 
TSCORE T0042 0 0.00 1FLP - 0 
TSCORE T0042 0 0.00 1FOS E 0 
TSCORE T0042 0 0.00 1FOS F 0 
TSCORE T0042 0 0.00 1HJR A 0 
TSCORE T0042 0 0.00 1HLH A 0 
TSCORE T0042 0 0.00 1HTM D 0 
TSCORE T0042 0 0.00 1HUW - 0 
TSCORE T0042 0 0.00 1HYP - 0 
TSCORE T0042 0 0.00 1ILK - 0 
TSCORE T0042 0 0.00 1ITG - 0 
TSCORE T0042 0 0.00 1L92 - 0 
TSCORE T0042 0 0.00 1LCC A 0 
TSCORE T0042 0 0.00 1LE4 - 0 
TSCORE T0042 0 0.00 1LIS - 0 
TSCORE T0042 0 0.00 1LLI A 0 
TSCORE T0042 0 0.00 1MDY A 0 
TSCORE T0042 0 0.00 1MLP A 0 
TSCORE T0042 0 0.00 1MMO G 0 
TSCORE T0042 0 0.00 1PDN C 0 
TSCORE T0042 0 0.00 1PYI A 0 
TSCORE T0042 0 0.00 1R69 - 0 
TSCORE T0042 0 0.00 1SCM A 0 
TSCORE T0042 0 0.00 1ZAA C 0 
TSCORE T0042 0 0.00 2KAU A 0 
TSCORE T0042 0 0.00 2RN2 - 0 
TSCORE T0042 0 0.00 2SCP A 0 
TSCORE T0042 0 0.00 2SPC A 0 
TSCORE T0042 0 0.00 2TRX A 0 
TSCORE T0042 0 0.00 2WRP R 0 
TSCORE T0042 0 0.00 3CHY - 0 
TSCORE T0042 0 0.00 3TRX - 0 
TSCORE T0042 0 0.00 4CPV - 0 
TSCORE T0042 0 0.00 4FXN - 0 
TSCORE T0042 0 0.00 4MBA - 0 
TSCORE T0042 0 0.00 5P21 - 0 
REMARK
REMARK The folds below were not in the initial
REMARK  top 100 scores and not passed through the filters
REMARK
TSCORE T0042 0 0.00 2MSB A 0 
TSCORE T0042 0 0.00 2TMV P 0 
TSCORE T0042 0 0.00 3AAH B 0 
TSCORE T0042 0 0.00 1LKK A 0 
TSCORE T0042 0 0.00 1PBA - 0 
TSCORE T0042 0 0.00 2PNA - 0 
TSCORE T0042 0 0.00 1YRN A 0 
TSCORE T0042 0 0.00 1AGI - 0 
TSCORE T0042 0 0.00 1POH - 0 
TSCORE T0042 0 0.00 1REC - 0 
TSCORE T0042 0 0.00 1BSR A 0 
TSCORE T0042 0 0.00 1SNC - 0 
TSCORE T0042 0 0.00 1RCI - 0 
TSCORE T0042 0 0.00 3B5C - 0 
TSCORE T0042 0 0.00 1PUC - 0 
TSCORE T0042 0 0.00 1FDD - 0 
TSCORE T0042 0 0.00 1LBA - 0 
TSCORE T0042 0 0.00 1HUM A 0 
TSCORE T0042 0 0.00 1DTR - 0 
TSCORE T0042 0 0.00 1REG X 0 
TSCORE T0042 0 0.00 1RIS - 0 
TSCORE T0042 0 0.00 1VIL - 0 
TSCORE T0042 0 0.00 2GF1 - 0 
TSCORE T0042 0 0.00 1TIF - 0 
TSCORE T0042 0 0.00 2FXB - 0 
TSCORE T0042 0 0.00 2TCT - 0 
TSCORE T0042 0 0.00 153L - 0 
TSCORE T0042 0 0.00 1DSB A 0 
TSCORE T0042 0 0.00 2MTA C 0 
TSCORE T0042 0 0.00 1LKI - 0 
TSCORE T0042 0 0.00 1WHT B 0 
TSCORE T0042 0 0.00 1VHH - 0 
TSCORE T0042 0 0.00 1GTQ A 0 
TSCORE T0042 0 0.00 2DRP A 0 
TSCORE T0042 0 0.00 1HUR A 0 
TSCORE T0042 0 0.00 2PLD A 0 
TSCORE T0042 0 0.00 2BOP A 0 
TSCORE T0042 0 0.00 1ICE A 0 
TSCORE T0042 0 0.00 1GAR B 0 
TSCORE T0042 0 0.00 1COL A 0 
TSCORE T0042 0 0.00 1XXB A 0 
TSCORE T0042 0 0.00 1TBP A 0 
TSCORE T0042 0 0.00 1PVU A 0 
TSCORE T0042 0 0.00 1STF I 0 
TSCORE T0042 0 0.00 1OTG A 0 
TSCORE T0042 0 0.00 2CDV - 0 
TSCORE T0042 0 0.00 1APK - 0 
TSCORE T0042 0 0.00 1CUS - 0 
TSCORE T0042 0 0.00 1LTS D 0 
TSCORE T0042 0 0.00 1UDI I 0 
TSCORE T0042 0 0.00 1FRD - 0 
TSCORE T0042 0 0.00 1HIP - 0 
TSCORE T0042 0 0.00 1PAZ - 0 
TSCORE T0042 0 0.00 2CHS A 0 
TSCORE T0042 0 0.00 1ACF - 0 
TSCORE T0042 0 0.00 1PIL - 0 
TSCORE T0042 0 0.00 1LFA A 0 
TSCORE T0042 0 0.00 1UBI - 0 
TSCORE T0042 0 0.00 1ONC - 0 
TSCORE T0042 0 0.00 1PKP - 0 
TSCORE T0042 0 0.00 1VCC - 0 
TSCORE T0042 0 0.00 3MDS A 0 
TSCORE T0042 0 0.00 1BRN L 0 
TSCORE T0042 0 0.00 1PNE - 0 
TSCORE T0042 0 0.00 9RNT - 0 
TSCORE T0042 0 0.00 1SPB P 0 
TSCORE T0042 0 0.00 3SIC I 0 
TSCORE T0042 0 0.00 1CHD - 0 
TSCORE T0042 0 0.00 1FXR A 0 
TSCORE T0042 0 0.00 1AFA 1 0 
TSCORE T0042 0 0.00 1MCA A 0 
TSCORE T0042 0 0.00 3IL8 - 0 
TSCORE T0042 0 0.00 2SN3 - 0 
TSCORE T0042 0 0.00 1FKB - 0 
TSCORE T0042 0 0.00 1GLQ A 0 
TSCORE T0042 0 0.00 1BAC - 0 
TSCORE T0042 0 0.00 1CHC - 0 
TSCORE T0042 0 0.00 1KPT A 0 
TSCORE T0042 0 0.00 1SAP - 0 
TSCORE T0042 0 0.00 1MHL A 0 
TSCORE T0042 0 0.00 1CEW I 0 
TSCORE T0042 0 0.00 1ABK - 0 
TSCORE T0042 0 0.00 1MYK A 0 
TSCORE T0042 0 0.00 1HPI - 0 
TSCORE T0042 0 0.00 1BTN - 0 
TSCORE T0042 0 0.00 1HRE - 0 
TSCORE T0042 0 0.00 1UDG - 0 
TSCORE T0042 0 0.00 1PSP A 0 
TSCORE T0042 0 0.00 1FC2 C 0 
TSCORE T0042 0 0.00 1PNK A 0 
TSCORE T0042 0 0.00 1HCR A 0 
TSCORE T0042 0 0.00 1PK4 - 0 
TSCORE T0042 0 0.00 1SSR - 0 
TSCORE T0042 0 0.00 1TPG - 0 
TSCORE T0042 0 0.00 1AK3 A 0 
TSCORE T0042 0 0.00 1CYX - 0 
TSCORE T0042 0 0.00 1DIS - 0 
TSCORE T0042 0 0.00 1TNM - 0 
TSCORE T0042 0 0.00 3CLA - 0 
TSCORE T0042 0 0.00 1PRT F 0 
TSCORE T0042 0 0.00 1POC - 0 
TSCORE T0042 0 0.00 1YPC I 0 
TSCORE T0042 0 0.00 1ERG - 0 
TSCORE T0042 0 0.00 1ESL - 0 
TSCORE T0042 0 0.00 1OTF A 0 
TSCORE T0042 0 0.00 1GMP A 0 
TSCORE T0042 0 0.00 1HNR - 0 
TSCORE T0042 0 0.00 1IFI - 0 
TSCORE T0042 0 0.00 1AAL A 0 
TSCORE T0042 0 0.00 1CSE I 0 
TSCORE T0042 0 0.00 1GP1 A 0 
TSCORE T0042 0 0.00 2PRD - 0 
TSCORE T0042 0 0.00 3EBX - 0 
TSCORE T0042 0 0.00 1ATA - 0 
TSCORE T0042 0 0.00 1BPK - 0 
TSCORE T0042 0 0.00 1PND - 0 
TSCORE T0042 0 0.00 1DBS - 0 
TSCORE T0042 0 0.00 1WFB A 0 
TSCORE T0042 0 0.00 8DFR - 0 
TSCORE T0042 0 0.00 1FNA - 0 
TSCORE T0042 0 0.00 2SAS - 0 
TSCORE T0042 0 0.00 1MSC - 0 
TSCORE T0042 0 0.00 1PVC 4 0 
TSCORE T0042 0 0.00 1PPT - 0 
TSCORE T0042 0 0.00 1PTX - 0 
TSCORE T0042 0 0.00 1HSQ - 0 
TSCORE T0042 0 0.00 2AZA A 0 
TSCORE T0042 0 0.00 1DYN A 0 
TSCORE T0042 0 0.00 2CPL - 0 
TSCORE T0042 0 0.00 2KAU B 0 
TSCORE T0042 0 0.00 1HYM A 0 
TSCORE T0042 0 0.00 1TEN - 0 
TSCORE T0042 0 0.00 1OPR - 0 
TSCORE T0042 0 0.00 1CD8 - 0 
TSCORE T0042 0 0.00 1PYA A 0 
TSCORE T0042 0 0.00 1BBL - 0 
TSCORE T0042 0 0.00 1NCG - 0 
TSCORE T0042 0 0.00 1DIF A 0 
TSCORE T0042 0 0.00 2HIP A 0 
TSCORE T0042 0 0.00 1GAT A 0 
TSCORE T0042 0 0.00 1BAM - 0 
TSCORE T0042 0 0.00 3PGM - 0 
TSCORE T0042 0 0.00 1TTB A 0 
TSCORE T0042 0 0.00 1BBA - 0 
TSCORE T0042 0 0.00 3GAP A 0 
TSCORE T0042 0 0.00 1NFP - 0 
TSCORE T0042 0 0.00 1PHT - 0 
TSCORE T0042 0 0.00 1HIV A 0 
TSCORE T0042 0 0.00 1MUP - 0 
TSCORE T0042 0 0.00 1EAF - 0 
TSCORE T0042 0 0.00 1BFG - 0 
TSCORE T0042 0 0.00 1FBR - 0 
TSCORE T0042 0 0.00 1ISU A 0 
TSCORE T0042 0 0.00 1FXD - 0 
TSCORE T0042 0 0.00 2PHY - 0 
TSCORE T0042 0 0.00 1AAP A 0 
TSCORE T0042 0 0.00 1LTS C 0 
TSCORE T0042 0 0.00 1TLK - 0 
TSCORE T0042 0 0.00 1HMP A 0 
TSCORE T0042 0 0.00 1HSB B 0 
TSCORE T0042 0 0.00 1MOL A 0 
TSCORE T0042 0 0.00 1MSA A 0 
TSCORE T0042 0 0.00 1PRT D 0 
TSCORE T0042 0 0.00 2PF2 - 0 
TSCORE T0042 0 0.00 1TFG - 0 
TSCORE T0042 0 0.00 1TGX A 0 
TSCORE T0042 0 0.00 1HDR - 0 
TSCORE T0042 0 0.00 1EHS - 0 
TSCORE T0042 0 0.00 1HTR P 0 
TSCORE T0042 0 0.00 1TPF A 0 
TSCORE T0042 0 0.00 1LAB - 0 
TSCORE T0042 0 0.00 1MJC - 0 
TSCORE T0042 0 0.00 2RSP A 0 
TSCORE T0042 0 0.00 1IAG - 0 
TSCORE T0042 0 0.00 1HCC - 0 
TSCORE T0042 0 0.00 8ATC B 0 
TSCORE T0042 0 0.00 1EXG - 0 
TSCORE T0042 0 0.00 2ZTA A 0 
TSCORE T0042 0 0.00 1COS A 0 
TSCORE T0042 0 0.00 1HPT - 0 
TSCORE T0042 0 0.00 1HCN B 0 
TSCORE T0042 0 0.00 1KJC - 0 
TSCORE T0042 0 0.00 1EGF - 0 
TSCORE T0042 0 0.00 1PDG A 0 
TSCORE T0042 0 0.00 1FIV A 0 
TSCORE T0042 0 0.00 1WAP A 0 
TSCORE T0042 0 0.00 1UBS A 0 
TSCORE T0042 0 0.00 1SMP I 0 
TSCORE T0042 0 0.00 1BGH - 0 
TSCORE T0042 0 0.00 2LAO - 0 
TSCORE T0042 0 0.00 1LYP - 0 
TSCORE T0042 0 0.00 1HCG B 0 
TSCORE T0042 0 0.00 1HOE - 0 
TSCORE T0042 0 0.00 1BOV A 0 
TSCORE T0042 0 0.00 2MEV 4 0 
TSCORE T0042 0 0.00 4SGB I 0 
TSCORE T0042 0 0.00 1ABO A 0 
TSCORE T0042 0 0.00 1BBP A 0 
TSCORE T0042 0 0.00 1SHG - 0 
TSCORE T0042 0 0.00 1CSM A 0 
TSCORE T0042 0 0.00 1ERL - 0 
TSCORE T0042 0 0.00 1CWP A 0 
TSCORE T0042 0 0.00 1BPB - 0 
TSCORE T0042 0 0.00 2CRD - 0 
TSCORE T0042 0 0.00 1CYN A 0 
TSCORE T0042 0 0.00 1IXA - 0 
TSCORE T0042 0 0.00 1LTS A 0 
TSCORE T0042 0 0.00 1CGJ I 0 
TSCORE T0042 0 0.00 1CAU B 0 
TSCORE T0042 0 0.00 1AHC - 0 
TSCORE T0042 0 0.00 1APH B 0 
TSCORE T0042 0 0.00 1BHP - 0 
TSCORE T0042 0 0.00 3SGB I 0 
TSCORE T0042 0 0.00 1PTQ - 0 
TSCORE T0042 0 0.00 8RXN A 0 
TSCORE T0042 0 0.00 1NCF A 0 
TSCORE T0042 0 0.00 1LPB A 0 
TSCORE T0042 0 0.00 1TFI - 0 
TSCORE T0042 0 0.00 1CLG A 0 
TSCORE T0042 0 0.00 1CDC B 0 
TSCORE T0042 0 0.00 1HDC A 0 
TSCORE T0042 0 0.00 1BET - 0 
TSCORE T0042 0 0.00 2BBK L 0 
TSCORE T0042 0 0.00 2CLG A 0 
TSCORE T0042 0 0.00 1CBN - 0 
TSCORE T0042 0 0.00 1BBT 4 0 
TSCORE T0042 0 0.00 2MCM - 0 
TSCORE T0042 0 0.00 1RSY - 0 
TSCORE T0042 0 0.00 2APD - 0 
TSCORE T0042 0 0.00 4BLM A 0 
TSCORE T0042 0 0.00 1MMH 5 0 
TSCORE T0042 0 0.00 1BBT 1 0 
TSCORE T0042 0 0.00 1IAA - 0 
TSCORE T0042 0 0.00 2BPA 3 0 
TSCORE T0042 0 0.00 1ERI A 0 
TSCORE T0042 0 0.00 1SLT B 0 
TSCORE T0042 0 0.00 1MML - 0 
TSCORE T0042 0 0.00 1COB A 0 
TSCORE T0042 0 0.00 1CNS A 0 
TSCORE T0042 0 0.00 9WGA A 0 
TSCORE T0042 0 0.00 1DUP A 0 
TSCORE T0042 0 0.00 1GPR - 0 
TSCORE T0042 0 0.00 1PRR - 0 
TSCORE T0042 0 0.00 1PDC - 0 
TSCORE T0042 0 0.00 2MLT A 0 
TSCORE T0042 0 0.00 1MMH 6 0 
TSCORE T0042 0 0.00 1DMA A 0 
TSCORE T0042 0 0.00 1ILR 1 0 
TSCORE T0042 0 0.00 1HCN A 0 
TSCORE T0042 0 0.00 1I1B - 0 
TSCORE T0042 0 0.00 1DEA A 0 
TSCORE T0042 0 0.00 1ENY - 0 
TSCORE T0042 0 0.00 1PRT B 0 
TSCORE T0042 0 0.00 1BI6 H 0 
TSCORE T0042 0 0.00 1PRT A 0 
TSCORE T0042 0 0.00 1GCN - 0 
TSCORE T0042 0 0.00 1CDA A 0 
TSCORE T0042 0 0.00 1BMT A 0 
TSCORE T0042 0 0.00 1EDT - 0 
TSCORE T0042 0 0.00 1MMH 3 0 
TSCORE T0042 0 0.00 1PYA B 0 
TSCORE T0042 0 0.00 1HCD - 0 
TSCORE T0042 0 0.00 1DMC - 0 
TSCORE T0042 0 0.00 1AHT L 0 
TSCORE T0042 0 0.00 1TAB I 0 
TSCORE T0042 0 0.00 1CAG B 0 
TSCORE T0042 0 0.00 1DME - 0 
TSCORE T0042 0 0.00 1TNF A 0 
TSCORE T0042 0 0.00 1RVE A 0 
TSCORE T0042 0 0.00 1MAT - 0 
TSCORE T0042 0 0.00 1RBP - 0 
TSCORE T0042 0 0.00 2IFO - 0 
TSCORE T0042 0 0.00 1PPN - 0 
TSCORE T0042 0 0.00 2SNV - 0 
TSCORE T0042 0 0.00 7API B 0 
TSCORE T0042 0 0.00 1MMH 7 0 
TSCORE T0042 0 0.00 1IFM - 0 
TSCORE T0042 0 0.00 1SE2 - 0 
TSCORE T0042 0 0.00 1BMV 1 0 
TSCORE T0042 0 0.00 1TYS - 0 
TSCORE T0042 0 0.00 1MEA - 0 
TSCORE T0042 0 0.00 4GCR - 0 
TSCORE T0042 0 0.00 1DAA A 0 
TSCORE T0042 0 0.00 1GPC - 0 
TSCORE T0042 0 0.00 2DNJ A 0 
TSCORE T0042 0 0.00 2ACH B 0 
TSCORE T0042 0 0.00 2HNP - 0 
TSCORE T0042 0 0.00 1DRI - 0 
TSCORE T0042 0 0.00 1BOM B 0 
TSCORE T0042 0 0.00 1TIE - 0 
TSCORE T0042 0 0.00 1PTS A 0 
TSCORE T0042 0 0.00 6RLX B 0 
TSCORE T0042 0 0.00 1CCO - 0 
TSCORE T0042 0 0.00 1TSS A 0 
TSCORE T0042 0 0.00 1BTD A 0 
TSCORE T0042 0 0.00 1YPT A 0 
TSCORE T0042 0 0.00 1APH A 0 
TSCORE T0042 0 0.00 6RLX A 0 
TSCORE T0042 0 0.00 2STV - 0 
TSCORE T0042 0 0.00 1CNV - 0 
TSCORE T0042 0 0.00 1NAL 1 0 
TSCORE T0042 0 0.00 1RLX B 0 
TSCORE T0042 0 0.00 1CSE E 0 
TSCORE T0042 0 0.00 1TML - 0 
TSCORE T0042 0 0.00 1DFN A 0 
TSCORE T0042 0 0.00 1DIH - 0 
TSCORE T0042 0 0.00 1PPE I 0 
TSCORE T0042 0 0.00 1CID - 0 
TSCORE T0042 0 0.00 1PAI B 0 
TSCORE T0042 0 0.00 1HLE B 0 
TSCORE T0042 0 0.00 1HSB A 0 
TSCORE T0042 0 0.00 4SBV A 0 
TSCORE T0042 0 0.00 1BTS - 0 
TSCORE T0042 0 0.00 1NIP B 0 
TSCORE T0042 0 0.00 2CYP - 0 
TSCORE T0042 0 0.00 1INA - 0 
TSCORE T0042 0 0.00 1CND - 0 
TSCORE T0042 0 0.00 1VMO A 0 
TSCORE T0042 0 0.00 1KNB - 0 
TSCORE T0042 0 0.00 1CTT - 0 
TSCORE T0042 0 0.00 1ORA - 0 
TSCORE T0042 0 0.00 1HSA A 0 
TSCORE T0042 0 0.00 1MMH 1 0 
TSCORE T0042 0 0.00 1MMH 2 0 
TSCORE T0042 0 0.00 1SCU A 0 
TSCORE T0042 0 0.00 1RLX A 0 
TSCORE T0042 0 0.00 1BTQ - 0 
TSCORE T0042 0 0.00 1CDL G 0 
TSCORE T0042 0 0.00 1BCX - 0 
TSCORE T0042 0 0.00 2HFT - 0 
TSCORE T0042 0 0.00 1NAR - 0 
TSCORE T0042 0 0.00 2PCD A 0 
TSCORE T0042 0 0.00 1TLF A 0 
TSCORE T0042 0 0.00 1APM I 0 
TSCORE T0042 0 0.00 1PDA - 0 
TSCORE T0042 0 0.00 1WHT A 0 
TSCORE T0042 0 0.00 3CD4 - 0 
TSCORE T0042 0 0.00 1ILL G 0 
TSCORE T0042 0 0.00 1GFF 2 0 
TSCORE T0042 0 0.00 1BOM A 0 
TSCORE T0042 0 0.00 2REB - 0 
TSCORE T0042 0 0.00 1STD - 0 
TSCORE T0042 0 0.00 1THT A 0 
TSCORE T0042 0 0.00 1AMP - 0 
TSCORE T0042 0 0.00 1MMH 4 0 
TSCORE T0042 0 0.00 1IRK - 0 
TSCORE T0042 0 0.00 1FNB - 0 
TSCORE T0042 0 0.00 1SBP - 0 
TSCORE T0042 0 0.00 1TSR A 0 
TSCORE T0042 0 0.00 1GLT - 0 
TSCORE T0042 0 0.00 1CAJ - 0 
TSCORE T0042 0 0.00 1SGT - 0 
TSCORE T0042 0 0.00 1BIA - 0 
TSCORE T0042 0 0.00 8ABP - 0 
TSCORE T0042 0 0.00 1CSN - 0 
TSCORE T0042 0 0.00 1LXA - 0 
TSCORE T0042 0 0.00 1CFB - 0 
TSCORE T0042 0 0.00 1ALS - 0 
TSCORE T0042 0 0.00 1HAN - 0 
TSCORE T0042 0 0.00 3TGL - 0 
TSCORE T0042 0 0.00 1PBN - 0 
TSCORE T0042 0 0.00 3HHR B 0 
TSCORE T0042 0 0.00 1THV - 0 
TSCORE T0042 0 0.00 2DLN - 0 
TSCORE T0042 0 0.00 1EDN - 0 
TSCORE T0042 0 0.00 1CTC - 0 
TSCORE T0042 0 0.00 1AXN - 0 
TSCORE T0042 0 0.00 1SOL - 0 
TSCORE T0042 0 0.00 1RPB - 0 
TSCORE T0042 0 0.00 1MLA - 0 
TSCORE T0042 0 0.00 1GHR - 0 
TSCORE T0042 0 0.00 1ADS - 0 
TSCORE T0042 0 0.00 2PTE E 0 
TSCORE T0042 0 0.00 2HAD - 0 
TSCORE T0042 0 0.00 1SAC A 0 
TSCORE T0042 0 0.00 4TS1 A 0 
TSCORE T0042 0 0.00 1GIA - 0 
TSCORE T0042 0 0.00 1ILL R 0 
TSCORE T0042 0 0.00 1AMB - 0 
TSCORE T0042 0 0.00 1PTA - 0 
TSCORE T0042 0 0.00 1NBA A 0 
TSCORE T0042 0 0.00 1PVC 3 0 
TSCORE T0042 0 0.00 1EZM - 0 
TSCORE T0042 0 0.00 1AYH - 0 
TSCORE T0042 0 0.00 1PFK A 0 
TSCORE T0042 0 0.00 1PLQ - 0 
TSCORE T0042 0 0.00 1XYZ A 0 
TSCORE T0042 0 0.00 1FRP A 0 
TSCORE T0042 0 0.00 1ILM B 0 
TSCORE T0042 0 0.00 1EMD - 0 
TSCORE T0042 0 0.00 1BDM A 0 
TSCORE T0042 0 0.00 2PCD M 0 
TSCORE T0042 0 0.00 1VCA A 0 
TSCORE T0042 0 0.00 1BBT 2 0 
TSCORE T0042 0 0.00 3ECA A 0 
TSCORE T0042 0 0.00 1PYP - 0 
TSCORE T0042 0 0.00 1TAH B 0 
TSCORE T0042 0 0.00 9LDT A 0 
TSCORE T0042 0 0.00 1ESC - 0 
TSCORE T0042 0 0.00 1CEO - 0 
TSCORE T0042 0 0.00 6LDH - 0 
TSCORE T0042 0 0.00 1QOR A 0 
TSCORE T0042 0 0.00 1CTM - 0 
TSCORE T0042 0 0.00 1HLE A 0 
TSCORE T0042 0 0.00 1PRC H 0 
TSCORE T0042 0 0.00 1MRR A 0 
TSCORE T0042 0 0.00 2LIV - 0 
TSCORE T0042 0 0.00 1HMY - 0 
TSCORE T0042 0 0.00 1GD1 O 0 
TSCORE T0042 0 0.00 1SCS - 0 
TSCORE T0042 0 0.00 1ADD - 0 
TSCORE T0042 0 0.00 1LEC - 0 
TSCORE T0042 0 0.00 1FBA A 0 
TSCORE T0042 0 0.00 1MFA - 0 
TSCORE T0042 0 0.00 1FPS - 0 
TSCORE T0042 0 0.00 1APM E 0 
TSCORE T0042 0 0.00 1PVC 1 0 
TSCORE T0042 0 0.00 1TCA - 0 
TSCORE T0042 0 0.00 2BLT A 0 
TSCORE T0042 0 0.00 1PRC C 0 
TSCORE T0042 0 0.00 1PRC M 0 
TSCORE T0042 0 0.00 2AAI B 0 
TSCORE T0042 0 0.00 1ARP - 0 
TSCORE T0042 0 0.00 1BCO - 0 
TSCORE T0042 0 0.00 1PVC 2 0 
TSCORE T0042 0 0.00 1ARB - 0 
TSCORE T0042 0 0.00 2PIA - 0 
TSCORE T0042 0 0.00 2MNR - 0 
TSCORE T0042 0 0.00 2MEV 1 0 
TSCORE T0042 0 0.00 1OMP - 0 
TSCORE T0042 0 0.00 1BVP 1 0 
TSCORE T0042 0 0.00 1CHR A 0 
TSCORE T0042 0 0.00 1PEA - 0 
TSCORE T0042 0 0.00 1XIC - 0 
TSCORE T0042 0 0.00 1VSG A 0 
TSCORE T0042 0 0.00 1XRA - 0 
TSCORE T0042 0 0.00 2BBV A 0 
TSCORE T0042 0 0.00 1UBS B 0 
TSCORE T0042 0 0.00 1HPM - 0 
TSCORE T0042 0 0.00 2NAC A 0 
TSCORE T0042 0 0.00 1PHP - 0 
TSCORE T0042 0 0.00 3PTE - 0 
TSCORE T0042 0 0.00 1SCU B 0 
TSCORE T0042 0 0.00 2OHX A 0 
TSCORE T0042 0 0.00 3MDD A 0 
TSCORE T0042 0 0.00 1DOB - 0 
TSCORE T0042 0 0.00 7AAT A 0 
TSCORE T0042 0 0.00 1OYB - 0 
TSCORE T0042 0 0.00 1NIF - 0 
TSCORE T0042 0 0.00 1HGE A 0 
TSCORE T0042 0 0.00 3BCL - 0 
TSCORE T0042 0 0.00 1MMO B 0 
TSCORE T0042 0 0.00 1CHM A 0 
TSCORE T0042 0 0.00 4ICD - 0 
TSCORE T0042 0 0.00 2POL A 0 
TSCORE T0042 0 0.00 1PRN - 0 
TSCORE T0042 0 0.00 1PGS - 0 
TSCORE T0042 0 0.00 1PHB - 0 
TSCORE T0042 0 0.00 1INP - 0 
TSCORE T0042 0 0.00 1PPK E 0 
TSCORE T0042 0 0.00 1TPL A 0 
TSCORE T0042 0 0.00 1APT - 0 
TSCORE T0042 0 0.00 1ADM A 0 
TSCORE T0042 0 0.00 1AMG - 0 
TSCORE T0042 0 0.00 2DKB - 0 
TSCORE T0042 0 0.00 4ENL - 0 
TSCORE T0042 0 0.00 2CTS - 0 
TSCORE T0042 0 0.00 1FCD A 0 
TSCORE T0042 0 0.00 1EFT - 0 
TSCORE T0042 0 0.00 1BNC A 0 
TSCORE T0042 0 0.00 1OMF - 0 
TSCORE T0042 0 0.00 1ADE A 0 
TSCORE T0042 0 0.00 1LGR - 0 
TSCORE T0042 0 0.00 5RUB B 0 
TSCORE T0042 0 0.00 1PII - 0 
TSCORE T0042 0 0.00 2BBK H 0 
TSCORE T0042 0 0.00 1GFF 1 0 
TSCORE T0042 0 0.00 1GCB - 0 
TSCORE T0042 0 0.00 1GLK - 0 
TSCORE T0042 0 0.00 1NHP - 0 
TSCORE T0042 0 0.00 2HPD A 0 
TSCORE T0042 0 0.00 1ALK A 0 
TSCORE T0042 0 0.00 1GLN - 0 
TSCORE T0042 0 0.00 3GRS - 0 
TSCORE T0042 0 0.00 1MIN A 0 
TSCORE T0042 0 0.00 1HKG - 0 
TSCORE T0042 0 0.00 2SIL - 0 
TSCORE T0042 0 0.00 1BNH - 0 
TSCORE T0042 0 0.00 1PKY A 0 
TSCORE T0042 0 0.00 3GLY - 0 
TSCORE T0042 0 0.00 1MYP C 0 
TSCORE T0042 0 0.00 1GPH 1 0 
TSCORE T0042 0 0.00 1DPG A 0 
TSCORE T0042 0 0.00 1MHL C 0 
TSCORE T0042 0 0.00 1LYL A 0 
TSCORE T0042 0 0.00 1SCC - 0 
TSCORE T0042 0 0.00 1LYL B 0 
TSCORE T0042 0 0.00 1CBG - 0 
TSCORE T0042 0 0.00 1NSC A 0 
TSCORE T0042 0 0.00 1BTC - 0 
TSCORE T0042 0 0.00 1LAM - 0 
TSCORE T0042 0 0.00 1GPM A 0 
TSCORE T0042 0 0.00 1GLA G 0 
TSCORE T0042 0 0.00 1CEL A 0 
TSCORE T0042 0 0.00 1HNY - 0 
TSCORE T0042 0 0.00 1AKL - 0 
TSCORE T0042 0 0.00 3COX - 0 
TSCORE T0042 0 0.00 1OEL A 0 
TSCORE T0042 0 0.00 1DPP A 0 
TSCORE T0042 0 0.00 8CAT A 0 
TSCORE T0042 0 0.00 1DDT - 0 
TSCORE T0042 0 0.00 1OLB A 0 
TSCORE T0042 0 0.00 1MMO D 0 
TSCORE T0042 0 0.00 1ECL - 0 
TSCORE T0042 0 0.00 1PYD A 0 
TSCORE T0042 0 0.00 1CLC - 0 
TSCORE T0042 0 0.00 1CTN - 0 
TSCORE T0042 0 0.00 1THG - 0 
TSCORE T0042 0 0.00 1PTH - 0 
TSCORE T0042 0 0.00 1PNK B 0 
TSCORE T0042 0 0.00 3PMG A 0 
TSCORE T0042 0 0.00 2KAU C 0 
TSCORE T0042 0 0.00 1POX A 0 
TSCORE T0042 0 0.00 1GAL - 0 
TSCORE T0042 0 0.00 1LLA - 0 
TSCORE T0042 0 0.00 1DLC - 0 
TSCORE T0042 0 0.00 1AOR A 0 
TSCORE T0042 0 0.00 1ASO A 0 
TSCORE T0042 0 0.00 1TSP - 0 
TSCORE T0042 0 0.00 3DPV A 0 
TSCORE T0042 0 0.00 3AAH A 0 
TSCORE T0042 0 0.00 1TRK A 0 
TSCORE T0042 0 0.00 1LCF - 0 
TSCORE T0042 0 0.00 1CDG - 0 
TSCORE T0042 0 0.00 1GOF - 0 
TSCORE T0042 0 0.00 1ORD A 0 
TSCORE T0042 0 0.00 1OAC A 0 
TSCORE T0042 0 0.00 8ACN - 0 
TSCORE T0042 0 0.00 1GPB - 0 
TSCORE T0042 0 0.00 1DIK - 0 
TSCORE T0042 0 0.00 1RAE - 0 
TSCORE T0042 0 0.00 1DHX - 0 
TSCORE T0042 0 0.00 1FLX - 0 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 89
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:   89  Type: P today Check: 100 ..
REMARK Name:           T0042 Len:   89 Check: 100  Weight: 1.00
REMARK Name:            1cyi Len:   89 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0042  ...GYFCESC RKIIQKLEDM VGP..QPNED TVTQAASQVC DKLKILRGLC 
REMARK        1cyi  ADLALGAQVF NGNCAACHMG GRNSVMPEKT LDKAALEQYL DGGFKVESII 
REMARK              51                                       89
REMARK       T0042  KKIMRS.... ..FLRRISWD ILTGKKPQAI CVDIKICKE
REMARK        1cyi  YQVENGKGAM PAWADRLSEE EIQAVAEYVF KQATDAAWK
TALIGN T0042 0    1   20 1CYI - 0       4      23     0.60   1 
TALIGN T0042 0   21   51 1CYI - 0      26      56     0.60   1 
TALIGN T0042 0   52   78 1CYI - 0      63      89     0.60   1 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 90
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:   90  Type: P today Check: 100 ..
REMARK Name:           T0042 Len:   90 Check: 100  Weight: 1.00
REMARK Name:            1cyi Len:   90 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0042  GYFCESCRKI IQKLEDMVGP QPN..EDTVT QAASQVCDKL KILRGLCKKI 
REMARK        1cyi  ADLALGAQVF NGNCAACHMG GRNSVMPEKT LDKAALEQYL DGGFKV.ESI 
REMARK              51                                        90
REMARK       T0042  MRSFLRR... ...ISW..DI LTGKKPQAIC VDIKICKE.. 
REMARK        1cyi  IYQVENGKGA MPAWADRLSE EEIQAVAEYV FKQATDAAWK 
TALIGN T0042 0    1   23 1CYI - 0       1      23     0.40   2 
TALIGN T0042 0   24   44 1CYI - 0      26      46     0.40   2 
TALIGN T0042 0   46   55 1CYI - 0      47      56     0.40   2 
TALIGN T0042 0   56   58 1CYI - 0      63      65     0.40   2 
TALIGN T0042 0   59   78 1CYI - 0      68      87     0.40   2 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 81
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:   81  Type: P today Check: 100 ..
REMARK Name:           T0042 Len:   81 Check: 100  Weight: 1.00
REMARK Name:           1hryA Len:   81 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0042  GYFCESCRKI IQKLEDMVGP QPNEDTVTQA ASQVCDKLKI LRGLCKKIMR 
REMARK       1hryA  DRVKRPMN.. ...AFIVWSR DQRRKMALEN PRMRNSE... ISKQLGYQWK 
REMARK              51                               81
REMARK       T0042  SFLRRISWDI LTGKKPQAIC VDIKICKE.. .
REMARK       1hryA  MLTEAEKWPF FQEAQKLQAM HREKYPNYKY R
TALIGN T0042 0    1    8 1HRY A 0       3      10     0.60   1 
TALIGN T0042 0   14   37 1HRY A 0      11      34     0.60   1 
TALIGN T0042 0   41   78 1HRY A 0      35      72     0.60   1 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 78
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:   78  Type: P today Check: 100 ..
REMARK Name:           T0042 Len:   78 Check: 100  Weight: 1.00
REMARK Name:           1hryA Len:   78 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0042  GYFCESCRKI IQKLEDMVGP QPNEDTVTQA ASQVCDKLKI LRGLCKKIMR 
REMARK       1hryA  ....DRVKRP MNAFIVWSRD QRRKMALENP RMRNSEISKQ LGYQWKMLTE 
REMARK              51                            78
REMARK       T0042  SFLRRISWDI LTGKKPQAIC VDIKICKE
REMARK       1hryA  AEKWPFFQEA QKLQAMHREK YPNYKYR.
TALIGN T0042 0    5   77 1HRY A 0       3      75     0.40   2 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 80
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:   80  Type: P today Check: 100 ..
REMARK Name:           T0042 Len:   80 Check: 100  Weight: 1.00
REMARK Name:            1neq Len:   80 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0042  GYFCESCRKI IQKLEDMVGP QPNEDTVTQA ASQVCDKLKI LRGLCKKIMR 
REMARK        1neq  CSNEKARDWH RADVIAGLKK R......KLS LSALSRQFGY APTTLANALE 
REMARK              51                              80
REMARK       T0042  SFLRRISWDI LTGKKPQAIC VD..IKICKE 
REMARK        1neq  RHWPKGEQII ANALETKPEV IWPSRYQAGE 
TALIGN T0042 0    1   21 1NEQ - 0       1      21     0.60   1 
TALIGN T0042 0   28   72 1NEQ - 0      22      66     0.60   1 
TALIGN T0042 0   73   78 1NEQ - 0      69      74     0.60   1 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 81
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:   81  Type: P today Check: 100 ..
REMARK Name:           T0042 Len:   81 Check: 100  Weight: 1.00
REMARK Name:            1neq Len:   81 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0042  .GYFCESCRK IIQKLEDMVG PQPNEDTVTQ AASQ.VCDKL KILRGLCKKI 
REMARK        1neq  CSNEKARDWH RADVIAGLKK RKLSLSALSR QFGYAPTTLA NALERHWPKG 
REMARK              51                               81
REMARK       T0042  MRSFLRRISW DILTGKKPQA IC.VDIKICK E
REMARK        1neq  EQIIANAL.. ....ETKPEV IWPSRYQAGE .
TALIGN T0042 0    1   33 1NEQ - 0       2      34     0.40   2 
TALIGN T0042 0   34   56 1NEQ - 0      36      58     0.40   2 
TALIGN T0042 0   63   70 1NEQ - 0      59      66     0.40   2 
TALIGN T0042 0   71   77 1NEQ - 0      68      74     0.40   2 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 82
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:   82  Type: P today Check: 100 ..
REMARK Name:           T0042 Len:   82 Check: 100  Weight: 1.00
REMARK Name:            1utg Len:   82 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0042  GYFCESCRKI IQKLEDMVGP QPNEDTVTQA ASQVCDKLKI LRGLCKKIMR 
REMARK        1utg  ....GICPRF AHVIENLLLG TP......SS YETSLKEFE. PDDTMKDAGM 
REMARK              51                                82
REMARK       T0042  SFLRRISWDI LTGKKPQAIC VDIKICKE.. ..
REMARK        1utg  QMKKVLDS.L PQTTRENIMK LTEKIVKSPL CM
TALIGN T0042 0    5   22 1UTG - 0       1      18     0.60   1 
TALIGN T0042 0   29   39 1UTG - 0      19      29     0.60   1 
TALIGN T0042 0   41   58 1UTG - 0      30      47     0.60   1 
TALIGN T0042 0   60   78 1UTG - 0      48      66     0.60   1 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 78
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:   78  Type: P today Check: 100 ..
REMARK Name:           T0042 Len:   78 Check: 100  Weight: 1.00
REMARK Name:            1utg Len:   78 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0042  GYFCESCRKI IQKLEDMVGP QPNEDTVTQA ASQVCDKLKI LRGLCKKIMR 
REMARK        1utg  ...GICPRFA HVIENLLLGT ....PSSYET SLKEFEPDDT MKDAGMQMKK 
REMARK              51                            78
REMARK       T0042  SFLRRISWDI LTGKKPQAIC VDIKICKE
REMARK        1utg  VLDSLPQTTR ENIMKLTEKI VKSPLCM.
TALIGN T0042 0    4   20 1UTG - 0       1      17     0.40   2 
TALIGN T0042 0   25   77 1UTG - 0      18      70     0.40   2 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 127
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:  127  Type: P today Check: 100 ..
REMARK Name:           T0042 Len:  127 Check: 100  Weight: 1.00
REMARK Name:           2ccyA Len:  127 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0042  .......... .GYFCESCRK IIQKLEDMVG .......... .......... 
REMARK       2ccyA  QSKPEDLLKL RQGLMQTLKS QWVPIAGFAA GKADLPADAA QRAENMAMVA 
REMARK              51                                                 100
REMARK       T0042  .......... ....PQPN.. EDTVTQAASQ VCDKLKILRG LCKKIMRSFL 
REMARK       2ccyA  KLAPIGWAKG TEALPNGETK PEAFGSKSAE FLEGWKALAT ESTKLAAAAK 
REMARK              101                         127
REMARK       T0042  RR.ISWDILT GKKPQAICVD IKICKE.
REMARK       2ccyA  AGPDALKAQA AATGKVCKAC HEEFKQD
TALIGN T0042 0    1   19 2CCY A 0      13      31     0.60   1 
TALIGN T0042 0   20   23 2CCY A 0      66      69     0.60   1 
TALIGN T0042 0   24   55 2CCY A 0      72     103     0.60   1 
TALIGN T0042 0   56   78 2CCY A 0     105     127     0.60   1 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 128
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:  128  Type: P today Check: 100 ..
REMARK Name:           T0042 Len:  128 Check: 100  Weight: 1.00
REMARK Name:           2ccyA Len:  128 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0042  .......... .......... .......... ........GY FCESCRKIIQ 
REMARK       2ccyA  QSKPEDLLKL RQGLMQTLKS QWVPIAGFAA GKADLPADAA QRAENMAMVA 
REMARK              51                                                 100
REMARK       T0042  KLEDMVGPQP N......... ...EDTVTQA ASQVCDKLKI LRGLCKKIMR 
REMARK       2ccyA  KLAPIGWAKG TEALPNGETK PEAFGSKSAE FLEGWKALAT ESTKLAAAAK 
REMARK              101                          128
REMARK       T0042  SFLRRISWDI LTGKKPQAIC VDIKICKE
REMARK       2ccyA  AGPDALKAQA AATGKVCKAC HEEFKQD.
TALIGN T0042 0    1   23 2CCY A 0      40      62     0.40   2 
TALIGN T0042 0   24   77 2CCY A 0      75     128     0.40   2 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 112
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:  112  Type: P today Check: 100 ..
REMARK Name:           T0042 Len:  112 Check: 100  Weight: 1.00
REMARK Name:            5pal Len:  112 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0042  .......... .......... .GYFC..... ......ESCR KIIQKLEDMV 
REMARK        5pal  PMTKVLKADD INKAISAFKD PGTFDYKRFF HLVGLKGKTD AQVKEVFEIL 
REMARK              51                                                 100
REMARK       T0042  GPQPNEDTVT QAASQVCDKL KIL.RGLCKK IMRSFLRRIS WDILTGK.KP 
REMARK        5pal  DKDQSGFIEE EELKGVLKGF SAHGRDLNDT ETKALLAAGD SDH.DGKIGA 
REMARK              101          112
REMARK       T0042  QAICVDIKIC KE
REMARK        5pal  DEFAKMVAQA ..
TALIGN T0042 0    1    4 5PAL - 0      22      25     0.60   1 
TALIGN T0042 0    5   41 5PAL - 0      37      73     0.60   1 
TALIGN T0042 0   42   60 5PAL - 0      75      93     0.60   1 
TALIGN T0042 0   62   64 5PAL - 0      94      96     0.60   1 
TALIGN T0042 0   65   76 5PAL - 0      98     109     0.60   1 
REMARK BLC2MSF.  R.B. Russell 1995
REMARK Alignment read in,    4 sequences, length is 109
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:  109  Type: P today Check: 100 ..
REMARK Name:           T0042 Len:  109 Check: 100  Weight: 1.00
REMARK Name:            5pal Len:  109 Check: 100  Weight: 1.00
REMARK //
REMARK              1                                                   50
REMARK       T0042  .......... .........G YFCESCRKII QKLEDMVGPQ PNEDTVTQAA 
REMARK        5pal  PMTKVLKADD INKAISAFKD PGTFDYKRFF HLVGLKGKTD AQVKEVFEIL 
REMARK              51                                                 100
REMARK       T0042  SQ......VC DKLKILRGLC KKI...MRSF LRRISWDILT GKKP...QAI 
REMARK        5pal  DKDQSGFIEE EELKGVLKGF SAHGRDLNDT ETKALLAAGD SDHDGKIGAD 
REMARK              101       109
REMARK       T0042  CVDIKICKE
REMARK        5pal  EFAKMVAQA
TALIGN T0042 0    1   33 5PAL - 0      20      52     0.40   2 
TALIGN T0042 0   34   48 5PAL - 0      59      73     0.40   2 
TALIGN T0042 0   49   66 5PAL - 0      77      94     0.40   2 
TALIGN T0042 0   67   78 5PAL - 0      98     109     0.40   2 



