
PFRMAT AL
TARGET T0086
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 1
PARENT 3pro_C
T    6 P 6
Q    7 Q 7
L    8 L 8
R    9 K 9
A   10 A 11
L   11 M 12
R   12 Q 13
Y   13 R 14
C   14 D 15
K   15 L 16
E   16 G 17
I   17 I 18
P   18 P 20
A   19 T 21
L   20 Q 22
D   21 L 23
P   22 P 24
Q   23 Q 25
L   24 Y 26
L   25 L 27
D   26 Q 28
W   27 T 29
L   28 R 34
L   29 T 35
L   30 Q 36
E   31 A 37
D   32 A 38
S   33 A 39
M   34 I 40
T   35 E 41
K   36 R 42
R   37 E 43
F   38 F 44
E   39 G 45
Q   40 A 46
Q   41 Q 47
G   42 D 58
K   43 G 59
T   44 S 60
V   45 F 61
S   46 K 62
V   47 L 63
T   48 V 64
M   49 A 65
I   50 A 66
R   51 T 67
E   52 S 68
G   53 G 69
F   54 A 70
V   55 R 71
E   56 K 72
Q   57 S 73
N   58 S 74
E   59 T 75
I   60 L 76
P   61 V 81
E   62 R 82
E   63 N 83
L   64 V 84
P   65 R 85
L   66 Y 86
L   67 S 87
P   68 L 88
K   69 K 89
E   70 Q 90
S   71 L 91
R   72 Q 92
Y   73 S 93
W   74 A 94
L   75 M 95
R   76 E 96
E   77 Q 97
I   78 L 98
L   79 D 99
L   80 A 100
C   81 A 104
A   82 L 113
D   83 D 114
G   84 G 115
E   85 Q 117
P   86 S 118
W   87 W 119
L   88 Y 120
A   89 V 121
G   90 D 122
R   91 N 126
T   92 A 127
V   93 V 128
V   94 V 129
P   95 V 130
V   96 K 131
S   97 V 132
T   98 D 133
L   99 D 134
S  100 G 135
G  101 A 136
P  102 T 137
E  103 D 138
L  104 A 139
A  105 G 140
L  106 V 141
Q  107 D 142
K  108 A 145
L  109 L 146
G  110 S 147
K  111 G 148
T  112 A 149
P  113 D 150
L  114 S 151
G  115 A 152
R  116 Q 153
Y  117 V 154
L  118 R 155
F  119 I 156
T  120 E 157
S  121 S 158
S  122 S 159
T  123 P 160
L  124 G 161
T  125 K 162
R  126 L 163
TER
END

