
PFRMAT AL
TARGET T0086
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  1
PARENT 1glp_A
I  60    P   1
P  61    P   2
E  62    Y   3
E  63    T   4
L  64    I   5
P  65    V   6
L  66    Y   7
L  67    F   8
P  68    P   9
K  69    V  10
E  70    R  11
S  71    G  12
R  72    R  13
Y  73    C  14
W  74    E  15
L  75    A  16
R  76    M  17
E  77    R  18
I  78    M  19
L  79    L  20
L  80    L  21
C  81    A  22
A  82    D  23
D  83    Q  24
G  84    G  25
E  85    Q  26
P  86    S  27
W  87    W  28
G  90    K  29
R  91    E  30
T  92    E  31
V  93    V  32
V  94    V  33
P  95    T  34
V  96    I  35
S  97    D  36
T  98    T  37
L  99    M  39
S 100    Q  40
G 101    G  41
P 102    P  45
E 103    T  46
L 104    C  47
A 105    L  48
L 106    Y  49
Q 107    G  50
K 108    Q  51
L 109    L  52
G 110    P  53
K 111    K  54
T 112    F  55
P 113    E  56
L 114    D  57
G 115    G  58
R 116    D  59
Y 117    L  60
L 118    L  62
F 119    Y  63
T 120    Q  64
S 121    S  65
S 122    N  66
T 123    A  67
L 124    I  68
T 125    L  69
R 126    R  70
E 130    H  71
I 131    L  72
G 132    G  73
R 133    R  74
D 134    S  75
A 135    L  76
G 136    G  77
L 137    L  78
W 138    Y  79
G 139    G  80
R 140    K  81
R 141    N  82
S 142    Q  83
R 143    R  84
TER
END

