
PFRMAT AL
TARGET T0086
AUTHOR 7023-8870-2129
METHOD ADDITIONAL INFORMATION
METHOD From target information:  protein is a monomer, crystal
METHOD pH 7.0, no disulfides
METHOD
METHOD PSI-Blast searching pulled in a small family of chorismate
METHOD lyase sequences
METHOD SENSER expanded the significant sequence space to
METHOD include GntR transcription
METHOD regulation family, however this family does not have a
METHOD sequence with known
METHOD structure.
METHOD Restarted SENSER search using manual alignment as
METHOD first profile in PSI-Blast
METHOD search. This run was also unable to move beyond the
METHOD GntR transcription family.
METHOD Looking at the multiple sequence alignment of the
METHOD chorismate lyase family
METHOD we identified a pattern of
METHOD [ST]x[ST]x{26,43}Rx{12,15}[AG]x[ST]x{47,67}Rx{14,15}Ex[FY]
METHOD We searched the pdb with this pattern but did not
METHOD find any sequences of known
METHOD structure which matched it.
MODEL  1
PARENT NONE
TER
END



