
PFRMAT AL
TARGET T0088
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=2.82 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hs1fdm0
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and environment-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  3
PARENT 1fdm
E   9     A     1 
N  10     E     2 
D  11     G     3 
V  12     D     4 
G  13     D     5 
P  14     P     6 
S  15     A     7 
Q  16     K     8 
G  17     A     9 
S  18     A    10 
Y  19     F    11 
S  20     D    12 
S  21     S    13 
T  22     L    14 
H  23     Q    15 
A  24     A    16 
R  93     S    17 
G  94     A    18 
T  95     T    19 
A  96     E    20 
M  97     Y    21 
S  98     I    22 
G  99     G    23 
N 100     Y    24 
S 101     A    25 
W 102     W    26 
S 134     A    27 
A 135     M    28 
Q 136     V    29 
Y 137     V    30 
S 138     V    31 
V 139     I    32 
Q 140     V    33 
K 141     G    34 
T 142     A    35 
S 143     T    36 
I 144     I    37 
G 145     G    38 
S 146     I    39 
I 147     K    40 
R 148     L    41 
M 149     F    42 
R 150     K    43 
P 151     K    44 
Y 152     F    45 
N 153     T    46 
G 154     S    47 
S 155     K    48 
S 156     A    49 
TER
END

