
PFRMAT AL
TARGET T0088
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=2.71 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: PGAM
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and environment-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  5
PARENT 1qhf_A
A   1     F    19 
V   2     T    20 
S   3     G    21 
F   4     W    22 
I   5     V    23 
G   6     D    24 
S   7     V    25 
T   8     K    26 
E   9     L    27 
N  10     S    28 
D  11     A    29 
V  12     K    30 
G  13     G    31 
P  14     Q    32 
S  15     Q    33 
Q  16     E    34 
G  17     A    35 
S  18     A    36 
Y  19     R    37 
S  20     A    38 
S  21     G    39 
T  22     E    40 
H  23     L    41 
A  24     L    42 
M  25     K    43 
D  26     E    44 
N  27     K    45 
L  28     K    46 
P  29     V    47 
F  30     V    51 
V  31     L    52 
Y  32     Y    53 
N  33     T    54 
T  34     S    55 
G  35     K    56 
Y  36     L    57 
N  37     S    58 
I  38     R    59 
G  39     A    60 
Y  40     I    61 
Q  41     Q    62 
N  42     T    63 
A  43     A    64 
N  44     N    65 
V  45     I    66 
W  46     A    67 
R  47     L    68 
I  48     E    69 
S  49     K    70 
G  50     A    71 
G  51     D    72 
F  52     I    76 
C  53     P    77 
V  54     V    78 
G  55     N    79 
L  56     R    80 
D  57     S    81 
G  58     W    82 
K  59     R    83 
V  60     L    84 
D  61     N    85 
L  62     E    86 
P  63     R    87 
V  64     H    88 
V  65     Y    89 
G  66     G    90 
S  67     D    91 
L  68     L    92 
D  69     Q    93 
G  70     G    94 
Q  71     K    95 
S  72     D    96 
I  73     K    97 
Y  74     A    98 
G  75     E    99 
L  76     T   100 
T  77     L   101 
E  78     K   102 
E  79     K   103 
V  80     F   104 
G  81     G   105 
L  82     E   106 
L  83     E   107 
I  84     K   108 
W  85     F   109 
M  86     N   110 
G  87     T   111 
D  88     Y   112 
T  89     R   113 
N  90     R   114 
Y  91     S   115 
S  92     S   126 
R  93     S   127 
G  94     P   128 
T  95     F   129 
A  96     S   130 
M  97     Q   131 
S  98     K   132 
G  99     G   133 
N 100     D   134 
S 101     E   135 
W 102     R   136 
E 103     Y   137 
N 104     K   138 
V 105     Y   139 
F 106     V   140 
S 107     D   141 
G 108     P   142 
W 109     N   143 
C 110     V   144 
V 111     L   145 
G 112     P   146 
N 113     E   147 
Y 114     T   148 
V 115     E   149 
S 116     S   150 
T 117     L   151 
Q 118     A   152 
G 119     L   153 
L 120     V   154 
S 121     I   155 
V 122     D   156 
H 123     R   157 
V 124     L   158 
R 125     L   159 
P 126     P   160 
V 127     Y   161 
I 128     W   162 
L 129     L   170 
K 130     L   171 
R 131     S   172 
N 132     G   173 
S 133     K   174 
S 134     T   175 
A 135     V   176 
Q 136     M   177 
Y 137     I   178 
S 138     A   179 
V 139     A   180 
Q 140     H   181 
K 141     G   182 
T 142     N   183 
S 143     S   184 
I 144     L   185 
G 145     R   186 
S 146     G   187 
I 147     L   188 
R 148     V   189 
M 149     K   190 
R 150     H   191 
P 151     L   192 
Y 152     E   193 
N 153     G   194 
G 154     I   195 
S 155     S   196 
S 156     D   197 
TER
END

