
PFRMAT AL
TARGET T0088
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 1
PARENT 1qts_A
G    6 G 692
S    7 S 693
T    8 P 694
E    9 G 695
N   10 I 696
D   11 R 697
V   12 L 698
G   13 G 699
P   14 S 700
S   15 S 701
Q   16 E 702
G   17 D 703
S   18 N 704
Y   19 F 705
S   20 A 706
S   21 R 707
T   22 F 708
H   23 V 709
A   24 C 710
M   25 K 711
D   26 N 712
N   27 N 713
L   28 G 714
P   29 V 715
F   30 L 716
V   31 F 717
Y   32 E 718
N   33 N 719
T   34 Q 720
G   35 L 721
Y   36 L 722
N   37 Q 723
I   38 I 724
G   39 G 725
Y   40 F 730
Q   41 R 731
N   42 Q 732
N   44 N 733
V   45 L 734
W   46 G 735
R   47 R 736
I   48 M 737
G   51 F 738
F   52 I 739
C   53 F 740
V   54 Y 741
G   55 G 742
L   56 N 743
D   57 K 744
G   58 T 745
K   59 S 746
V   60 T 747
D   61 Q 748
L   62 F 749
P   63 L 750
V   64 N 751
V   65 F 752
G   66 T 753
S   67 P 754
L   68 T 755
L   83 L 756
I   84 I 757
W   85 C 758
M   86 A 759
G   87 D 760
D   88 D 761
T   89 T 770
N   90 K 771
Y   91 P 772
S   92 V 773
R   93 D 774
G   94 P 775
T   95 T 776
A   96 V 777
M   97 D 778
S   98 G 779
G   99 G 780
N  100 A 781
S  101 Q 782
W  102 V 783
E  103 Q 784
N  104 Q 785
V  105 V 786
F  106 V 787
S  107 N 788
G  108 I 789
W  109 E 790
C  110 C 791
V  111 I 792
G  112 S 793
N  113 D 794
Y  114 F 795
V  115 T 796
S  116 E 797
T  117 A 798
Q  118 P 799
G  119 V 800
L  120 L 801
S  121 N 802
V  122 I 803
H  123 Q 804
V  124 F 805
R  125 R 806
P  126 N 813
V  127 V 814
I  128 S 815
L  129 V 816
K  130 K 817
R  131 L 818
N  132 P 819
S  133 I 820
S  134 T 821
A  135 L 822
Q  136 N 823
Y  137 K 824
TER
END

