
PFRMAT AL
TARGET T0088
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 2
PARENT 1wkt
M   25 G 1
D   26 D 2
N   27 G 3
L   28 Y 4
P   29 L 5
F   30 I 6
V   31 M 7
Y   32 C 8
N   33 N 10
T   34 C 11
G   35 D 12
Y   36 P 13
N   37 N 14
I   38 T 15
G   39 G 16
A   43 S 17
N   44 C 18
V   45 D 19
W   46 W 20
R   47 K 21
I   48 Q 22
S   49 N 23
G   50 W 24
G   51 N 25
F   52 T 26
C   53 C 27
V   54 V 28
G   55 G 29
L   56 I 30
D   57 G 31
G   58 A 32
K   59 N 33
V   60 V 34
D   61 H 35
L   62 W 36
P   63 M 37
V   64 V 38
V   65 T 39
G   66 G 40
S   67 S 42
L   68 T 43
D   69 D 44
G   70 G 45
Q   71 K 46
S   72 Q 47
G   81 G 48
L   82 C 49
L   83 A 50
I   84 T 51
W   85 I 52
M   86 W 53
G   87 E 54
D   88 G 55
T   89 S 56
N   90 G 57
Y   91 C 58
S   98 V 59
G   99 G 60
N  100 R 61
S  101 S 62
F  106 T 63
S  107 T 64
G  108 M 65
W  109 C 66
C  110 C 67
V  111 P 68
G  112 A 69
N  113 N 70
V  127 T 71
I  128 C 72
L  129 C 73
K  130 N 74
R  131 I 75
N  132 N 76
S  133 T 77
S  134 G 78
A  135 F 79
Q  136 Y 80
I  144 I 81
G  145 R 82
S  146 S 83
I  147 Y 84
R  148 R 85
M  149 R 86
R  150 V 87
P  151 E 88
TER
END

