
PFRMAT AL
TARGET T0088
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 3
PARENT 4fiv
Y   32 V 4
N   33 G 5
T   34 T 6
G   35 T 7
Y   36 T 8
N   37 T 9
I   38 L 10
G   39 E 11
Y   40 K 12
Q   41 R 13
N   42 P 14
A   43 E 15
N   44 I 16
V   45 L 17
W   46 I 18
R   47 F 19
I   48 V 20
S   49 N 21
G   50 G 22
G   51 P 24
F   52 I 25
C   53 K 26
V   54 F 27
G   55 L 28
L   56 L 29
D   57 D 30
G   58 T 31
K   59 G 32
V   60 A 33
D   61 D 34
L   62 I 35
P   63 T 36
V   64 I 37
V   65 L 38
G   66 N 39
S   67 R 40
L   68 R 41
D   69 D 42
G   70 F 43
Q   71 Q 44
I   73 V 45
Y   74 K 46
G   75 N 47
L   76 S 48
T   77 I 49
E   78 E 50
E   79 N 51
V   80 G 52
G   81 R 53
L   82 Q 54
L   83 N 55
I   84 M 56
W   85 I 57
M   86 G 58
G   87 V 59
D   88 G 60
T   95 G 61
A   96 G 62
M   97 K 63
S   98 R 64
G   99 G 65
N  100 T 66
S  101 N 67
W  102 Y 68
E  103 I 69
N  104 N 70
V  105 V 71
F  106 H 72
S  107 L 73
G  108 E 74
W  109 I 75
C  110 R 76
G  112 D 77
N  113 E 78
Y  114 N 79
V  115 Y 80
S  116 K 81
T  117 T 82
Q  118 Q 83
S  121 C 84
V  122 I 85
H  123 F 86
V  124 G 87
R  125 N 88
P  126 V 89
V  127 C 90
I  128 V 91
L  129 L 92
K  130 E 93
R  131 D 94
N  132 N 95
S  133 S 96
S  134 L 97
A  135 I 98
Q  136 Q 99
Y  137 P 100
S  138 L 101
V  139 L 102
Q  140 G 103
K  141 R 104
T  142 D 105
S  143 N 106
I  144 M 107
G  145 I 108
S  146 K 109
I  147 F 110
R  148 N 111
M  149 I 112
R  150 R 113
P  151 L 114
Y  152 V 115
N  153 M 116
TER
END

