
PFRMAT AL
TARGET T0088
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 4
PARENT 1cx1_A
G   17 A 1
S   18 S 2
Y   19 L 3
S   20 S 5
S   21 E 6
T   22 V 7
H   23 E 8
A   24 L 9
M   25 L 10
D   26 P 11
N   27 H 12
L   28 T 13
P   29 S 14
F   30 F 15
V   31 A 16
Y   32 E 17
N   33 S 18
T   34 L 19
G   35 G 20
Y   36 P 21
N   37 W 22
I   38 S 23
G   39 L 24
Y   40 Y 25
Q   41 G 26
N   42 T 27
A   43 S 28
N   44 E 29
V   45 P 30
W   46 V 31
R   47 F 32
I   48 A 33
S   49 D 34
G   50 G 35
G   51 R 36
F   52 M 37
C   53 C 38
V   54 V 39
G   55 D 40
L   56 L 41
D   57 P 42
G   58 G 43
K   59 G 44
V   60 Q 45
D   61 G 46
L   62 N 47
P   63 P 48
V   64 A 51
V   65 G 52
G   66 L 53
S   67 V 54
L   68 Y 55
D   69 N 56
G   70 G 57
Q   71 V 58
S   72 P 59
I   73 V 60
Y   74 G 61
G   75 G 63
L   76 E 64
T   77 S 65
E   78 Y 66
E   79 V 67
V   80 L 68
G   81 S 69
L   82 F 70
L   83 T 71
I   84 A 72
W   85 S 73
M   86 V 84
G   87 G 85
D   88 E 86
T   89 G 87
N   90 G 88
Y   91 G 89
S   92 A 90
R   93 Y 91
G   94 R 92
T   95 T 93
A   96 A 94
M   97 F 119
S   98 P 120
G   99 P 121
N  100 D 122
S  101 G 123
W  102 D 124
E  103 A 125
N  104 P 126
V  105 G 127
F  106 Q 128
S  107 V 129
G  108 A 130
W  109 F 131
C  110 H 132
V  111 L 133
G  112 G 134
S  116 K 135
T  117 A 136
Q  118 G 137
G  119 A 138
L  120 Y 139
S  121 E 140
V  122 F 141
H  123 C 142
V  124 I 143
R  125 S 144
P  126 Q 145
V  127 V 146
I  128 S 147
L  129 L 148
K  130 T 149
R  131 T 150
N  132 S 151
S  133 A 152
S  134 T 153
TER
END

