
PFRMAT AL
TARGET T0088
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 5
PARENT 1ulo
G   17 A 1
S   18 S 2
Y   19 P 3
S   20 I 4
S   21 G 5
T   22 E 6
H   23 G 7
A   24 T 8
M   25 F 9
D   26 D 10
N   27 D 11
L   28 G 15
P   29 W 16
F   30 V 17
V   31 A 18
Y   32 Y 19
N   33 G 20
T   34 T 21
G   35 D 22
Y   36 G 23
N   37 P 24
I   38 L 25
G   39 D 26
Y   40 T 27
Q   41 S 28
N   42 T 29
G   50 G 30
G   51 A 31
F   52 L 32
C   53 C 33
V   54 V 34
G   55 A 35
L   56 V 36
D   57 P 37
G   58 A 38
K   59 G 39
V   60 A 41
D   61 Q 42
L   62 Y 43
P   63 G 44
V   64 V 45
V   65 G 46
G   66 V 47
S   67 V 48
L   68 L 49
D   69 N 50
G   70 G 51
Q   71 V 52
S   72 A 53
I   73 I 54
Y   74 E 55
G   75 G 57
L   76 T 58
T   77 T 59
E   78 V 72
E   79 T 73
V   80 V 74
G   81 R 75
L   82 A 76
L   83 L 77
I   84 V 78
W   85 G 79
M   86 N 81
G   87 G 82
D   88 A 83
T   89 G 86
N   90 T 87
Y   91 V 88
S   92 L 89
R   93 D 90
G   94 T 91
T   95 S 92
A   96 P 93
M   97 A 94
S   98 L 95
G   99 T 96
N  100 S 97
S  101 E 98
W  102 P 99
E  103 R 100
N  104 Q 101
V  105 V 102
F  106 T 103
S  107 E 104
G  108 T 105
W  109 F 106
C  110 T 107
V  111 A 108
G  112 S 109
N  113 P 113
Y  114 A 114
V  115 T 115
S  116 P 116
T  117 A 117
Q  118 A 118
G  119 D 119
L  120 D 120
S  121 P 121
V  122 E 122
H  123 G 123
V  124 Q 124
R  125 I 125
P  126 A 126
V  127 F 127
I  128 Q 128
L  129 L 129
K  130 G 130
R  131 G 131
N  132 F 132
S  133 S 133
S  134 A 134
A  135 D 135
Q  136 A 136
Y  137 W 137
S  138 T 138
V  139 L 139
Q  140 C 140
K  141 L 141
T  142 D 142
S  143 D 143
I  144 V 144
S  146 A 145
I  147 L 146
R  148 D 147
M  149 S 148
R  150 E 149
P  151 V 150
Y  152 E 151
N  153 L 152
TER
END

