
PFRMAT AL
TARGET T0088
AUTHOR 3995-5176-6362
METHOD Chandonia & Cohen, mostly unpublished.
METHOD Uses a combination of PSI-BLAST scoring matrix
METHOD and Pred2ary secondary structure prediction.
METHOD Pred2ary page is http://www.cmpharm.ucsf.edu/~jmc/pred2ary/
METHOD The potential is documented in the paper by
METHOD Schwartz et al which is referenced on
METHOD my research page: http://www.cmpharm.ucsf.edu/~jmc/research.html
MODEL 1
PARENT 2cpl
A 1 V 2
V 2 N 3
S 3 P 4
F 4 T 5
I 5 V 6
G 6 F 7
S 7 F 8
T 8 D 9
E 9 I 10
N 10 A 11
D 11 V 12
V 12 D 13
G 13 G 14
P 14 E 15
S 15 P 16
Q 16 L 17
G 17 G 18
S 18 R 19
Y 19 V 20
S 20 S 21
S 21 F 22
T 22 E 23
H 23 L 24
A 24 F 25
M 25 A 26
D 26 D 27
N 27 K 28
L 28 V 29
P 29 P 30
F 30 K 31
V 31 T 32
Y 32 L 39
N 33 S 40
T 34 T 41
G 35 G 42
Y 36 K 44
N 37 G 45
I 38 F 46
G 39 G 47
Y 40 Y 48
Q 41 K 49
N 42 G 50
A 43 S 51
N 44 C 52
V 45 F 53
W 46 H 54
R 47 R 55
I 48 I 56
S 49 I 57
G 50 P 58
G 51 G 59
F 52 F 60
C 53 C 62
V 54 Q 63
G 55 G 64
L 56 G 65
D 57 D 66
G 58 G 72
L 68 T 73
D 69 G 74
G 70 G 75
Q 71 K 76
S 72 S 77
I 73 I 78
Y 74 Y 79
G 75 G 80
L 76 F 83
T 77 E 84
E 78 D 85
E 79 E 86
V 80 N 87
G 81 F 88
L 82 I 89
L 83 L 90
I 84 K 91
W 85 H 92
M 86 T 93
G 87 G 94
D 88 P 95
T 89 G 96
N 90 I 97
Y 91 L 98
S 92 S 99
R 93 M 100
G 94 A 101
T 95 N 102
A 96 A 103
M 97 G 104
S 98 P 105
G 99 N 106
N 100 T 107
S 101 N 108
W 102 G 109
E 103 S 110
N 104 Q 111
V 105 F 112
F 106 F 113
S 107 I 114
C 110 C 115
V 111 T 116
G 112 A 117
N 113 K 118
Y 114 T 119
V 115 E 120
S 116 W 121
T 117 L 122
Q 118 D 123
G 119 G 124
L 120 K 125
S 121 H 126
V 122 V 127
V 127 V 128
I 128 F 129
L 129 G 130
K 130 K 131
R 131 R 148
N 132 N 149
S 133 G 150
S 134 K 151
A 135 T 152
Q 136 S 153
Y 137 K 154
S 138 K 155
V 139 I 156
Q 140 T 157
K 141 I 158
T 142 A 159
S 143 D 160
I 144 C 161
G 145 G 162
S 146 Q 163
I 147 L 164
R 148 E 165
TER
END

