
PFRMAT AL
TARGET T0088
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  3
PARENT 1a12_A
S   3    S 288
F   4    F 289
I   5    K 290
G   6    N 291
S   7    S 292
T   8    T 293
E   9    K 294
N  10    S 295
D  11    W 296
V  12    V 297
G  13    G 298
P  14    F 299
S  15    S 300
Q  16    G 301
G  17    G 302
S  18    Q 303
Y  19    H 304
S  20    H 305
T  22    T 306
H  23    V 307
A  24    C 308
M  25    M 309
D  26    D 310
N  27    S 311
L  28    E 312
P  29    G 313
F  30    K 314
V  31    A 315
Y  32    Y 316
N  33    S 317
T  34    L 318
G  35    G 319
N  42    R 320
A  43    A 321
N  44    E 322
V  45    Y 323
W  46    G 324
R  47    R 325
I  48    L 326
G  51    G 327
F  52    L 328
C  53    G 329
V  54    E 330
G  55    G 331
L  56    A 332
D  57    E 333
G  58    E 334
K  59    K 335
V  60    S 336
D  61    R 343
L  62    L 344
P  63    P 345
V  64    A 346
V  65    V 347
G  66    S 348
S  67    S 349
L  68    V 350
D  69    A 351
G  70    G 353
Q  71    A 354
S  72    S 355
I  73    V 356
Y  74    Y 358
G  75    A 359
L  76    V 360
T  77    T 361
E  78    K 362
E  79    D 363
V  80    G 364
G  81    R 365
L  82    V 366
L  83    F 367
I  84    A 368
W  85    W 369
M  86    G 370
G  87    M 371
D  88    G 372
T  89    T 373
N  90    N 374
Y  91    Y 375
S  92    Q 376
R  93    L 377
G  94    G 378
T  95    T 379
A  96    G 380
M  97    Q 381
S  98    D 382
G  99    E 383
N 100    D 384
S 101    A 385
W 102    W 386
E 103    S 387
N 104    P 388
V 105    V 389
TER
END


