
PFRMAT AL
TARGET T0088
AUTHOR 8971-8833-9593
METHOD FFAS (http://bioinformatics.burnham-inst.org/FFAS/)
METHOD Fold & Function Assignment System A profile-profile alignment method.
METHOD 1) PSI-Blast is used to collect homologs
METHOD 2) The sequences of homologs are translated into a profile
METHOD    [The translation is not based on PSI-Blast approach]
METHOD 3) Translated profile is aligned against a profile database
MODEL  5
PARENT 1qft_A
E 9 E 8
N 10 A 9
D 11 A 10
V 12 N 11
G 13 G 12
P 14 A 13
S 15 H 14
Q 16 Q 15
G 17 D 16
S 18 A 17
Y 19 W 18
S 20 K 19
S 21 S 20
T 22 L 21
H 23 K 22
A 24 A 23
M 25 D 24
V 31 V 25
Y 32 E 26
N 33 N 27
T 34 V 28
G 35 Y 29
Y 36 Y 30
N 37 M 31
I 38 V 32
G 39 K 33
Y 40 Y 36
Q 41 K 37
N 42 N 38
A 43 D 39
N 44 P 40
V 45 V 41
W 46 W 42
S 49 G 43
G 50 N 44
G 51 D 45
F 52 F 46
C 53 C 48
V 54 V 49
G 55 G 50
V 60 V 51
D 61 M 52
L 62 A 53
P 63 N 54
V 64 D 55
V 65 V 56
G 66 N 57
S 67 E 58
D 69 D 59
G 70 E 60
Q 71 K 61
S 72 S 62
I 73 I 63
E 78 Q 64
E 79 A 65
V 80 E 66
G 81 F 67
L 82 L 68
L 83 F 69
I 84 M 70
W 85 N 71
M 86 N 72
G 87 A 73
D 88 D 74
T 89 T 75
N 90 N 76
Y 91 M 77
S 92 Q 78
R 93 K 83
G 94 V 84
T 95 T 85
A 96 A 86
M 97 M 89
S 98 Y 90
G 99 G 91
N 100 Y 92
S 101 N 93
W 102 R 94
E 103 E 95
N 104 N 96
V 105 A 97
F 106 F 98
S 107 R 99
G 108 Y 100
W 109 E 101
C 110 T 102
V 111 E 103
G 112 D 104
N 113 G 105
Y 114 Q 106
V 115 V 107
S 116 F 108
T 117 T 109
Q 118 D 110
G 119 V 111
L 120 I 112
S 121 A 113
V 122 Y 114
H 123 D 120
V 124 V 121
R 125 I 122
P 126 Y 123
V 127 V 124
I 128 P 125
L 129 G 126
K 130 T 127
R 131 D 128
N 132 G 129
S 133 N 130
S 134 E 131
A 135 E 132
Q 136 G 133
Y 137 Y 134
S 138 E 135
V 139 L 136
Q 140 W 137
K 141 T 138
T 142 T 139
S 143 D 140
I 144 Y 141
G 145 D 142
S 146 N 143
I 147 I 144
P 151 P 145
Y 152 A 146
N 153 N 147
TER
END

