
PFRMAT TS 
TARGET T0088
AUTHOR 1395-2891-7461
REMARK
REMARK Ugo Bastolla, Jochen Farwer and Ernst-Walter Knapp
REMARK Freie Universitaet Berlin, Institute of Crystallography
REMARK
METHOD For all fragments of the given sequence with length
METHOD between 35 and 85 residues, decoy structures were generated by
METHOD threading using a set of 1015 proteins (Hobohm U, Sander C.
METHOD Enlarged representative set of protein structure.
METHOD Protein Sci 1994; 3: 522-524. List available at
METHOD ftp://ftp.embl-heidelberg.de/pub/databases/
METHOD protein_extras/pdb_select/recent.pdb_select).
METHOD For all fragments the decoy structure of lowest energy was determined
METHOD using a modification of the energy function described in
METHOD (Bastolla U, Vendruscolo M,
METHOD Knapp EW.
METHOD A statistical mechanical method to optimize energy functions for
METHOD protein folding.
METHOD Proc Natl Acad Sci USA 2000, 97: 3977-3981).
METHOD An alignment was chosen using the z score, the alpha value and
METHOD a secondary structure prediction made by NNSSP
METHOD (Salamov A.A., Solovyev V.V.
METHOD Prediction of protein secondary sturcture by combining
METHOD nearest-neighbor algorithms and multiple sequence alignments.
METHOD J.Mol.Biol.,1995, 247, 11-15.).
MODEL 2
PARENT 1tx4_A
ATOM      1  N   GLU    9       16.070  11.931  21.554  1.00  0.00          N
ATOM      2  CA  GLU    9       16.574  10.789  20.798  1.00  0.00          C
ATOM      3  C   GLU    9       17.611   9.922  21.486  1.00  0.00          C
ATOM      4  O   GLU    9       18.220   9.062  20.821  1.00  0.00          O
ATOM      5  N   ASN   10       17.880  10.165  22.759  1.00  0.00          N
ATOM      6  CA  ASN   10       18.977   9.444  23.418  1.00  0.00          C
ATOM      7  C   ASN   10       18.802   7.921  23.422  1.00  0.00          C
ATOM      8  O   ASN   10       19.772   7.181  23.500  1.00  0.00          O
ATOM      9  N   ASP   11       17.538   7.512  23.410  1.00  0.00          N
ATOM     10  CA  ASP   11       17.240   6.083  23.520  1.00  0.00          C
ATOM     11  C   ASP   11       16.678   5.504  22.247  1.00  0.00          C
ATOM     12  O   ASP   11       16.108   4.419  22.250  1.00  0.00          O
ATOM     13  N   VAL   12       16.878   6.237  21.133  1.00  0.00          N
ATOM     14  CA  VAL   12       16.313   5.758  19.847  1.00  0.00          C
ATOM     15  C   VAL   12       17.262   4.834  19.092  1.00  0.00          C
ATOM     16  O   VAL   12       18.332   5.294  18.693  1.00  0.00          O
ATOM     17  N   GLY   13       16.829   3.620  18.800  1.00  0.00          N
ATOM     18  CA  GLY   13       17.667   2.664  18.096  1.00  0.00          C
ATOM     19  C   GLY   13       18.079   3.230  16.722  1.00  0.00          C
ATOM     20  O   GLY   13       17.254   3.692  15.913  1.00  0.00          O
ATOM     21  N   PRO   14       19.396   3.226  16.527  1.00  0.00          N
ATOM     22  CA  PRO   14       19.989   3.576  15.229  1.00  0.00          C
ATOM     23  C   PRO   14       20.054   5.059  15.001  1.00  0.00          C
ATOM     24  O   PRO   14       20.088   5.474  13.812  1.00  0.00          O
ATOM     25  N   SER   15       19.919   5.904  16.023  1.00  0.00          N
ATOM     26  CA  SER   15       20.027   7.357  15.774  1.00  0.00          C
ATOM     27  C   SER   15       21.414   7.608  15.174  1.00  0.00          C
ATOM     28  O   SER   15       22.453   7.093  15.612  1.00  0.00          O
ATOM     29  N   GLN   16       21.428   8.381  14.069  1.00  0.00          N
ATOM     30  CA  GLN   16       22.585   8.660  13.234  1.00  0.00          C
ATOM     31  C   GLN   16       22.896   7.532  12.244  1.00  0.00          C
ATOM     32  O   GLN   16       23.759   7.756  11.405  1.00  0.00          O
ATOM     33  N   GLY   17       22.276   6.392  12.367  1.00  0.00          N
ATOM     34  CA  GLY   17       22.448   5.297  11.401  1.00  0.00          C
ATOM     35  C   GLY   17       21.324   5.343  10.375  1.00  0.00          C
ATOM     36  O   GLY   17       21.537   5.019   9.205  1.00  0.00          O
ATOM     37  N   SER   18       20.114   5.648  10.825  1.00  0.00          N
ATOM     38  CA  SER   18       18.958   5.653   9.895  1.00  0.00          C
ATOM     39  C   SER   18       18.939   6.921   9.045  1.00  0.00          C
ATOM     40  O   SER   18       19.507   7.971   9.324  1.00  0.00          O
ATOM     41  N   TYR   19       18.407   6.707   7.853  1.00  0.00          N
ATOM     42  CA  TYR   19       18.250   7.795   6.864  1.00  0.00          C
ATOM     43  C   TYR   19       17.056   8.686   7.232  1.00  0.00          C
ATOM     44  O   TYR   19       16.171   8.297   8.016  1.00  0.00          O
ATOM     45  N   SER   20       16.980   9.806   6.506  1.00  0.00          N
ATOM     46  CA  SER   20       15.816  10.694   6.614  1.00  0.00          C
ATOM     47  C   SER   20       15.265  10.907   5.198  1.00  0.00          C
ATOM     48  O   SER   20       15.956  10.468   4.257  1.00  0.00          O
ATOM     49  N   SER   21       14.118  11.578   5.151  1.00  0.00          N
ATOM     50  CA  SER   21       13.504  11.697   3.776  1.00  0.00          C
ATOM     51  C   SER   21       14.282  12.708   2.946  1.00  0.00          C
ATOM     52  O   SER   21       14.453  13.833   3.430  1.00  0.00          O
ATOM     53  N   THR   22       14.574  12.359   1.703  1.00  0.00          N
ATOM     54  CA  THR   22       15.310  13.273   0.823  1.00  0.00          C
ATOM     55  C   THR   22       14.719  14.680   0.750  1.00  0.00          C
ATOM     56  O   THR   22       15.383  15.730   0.742  1.00  0.00          O
ATOM     57  N   HIS   23       13.420  14.663   0.431  1.00  0.00          N
ATOM     58  CA  HIS   23       12.690  15.952   0.240  1.00  0.00          C
ATOM     59  C   HIS   23       12.652  16.773   1.513  1.00  0.00          C
ATOM     60  O   HIS   23       12.920  17.983   1.434  1.00  0.00          O
ATOM     61  N   ALA   24       12.320  16.143   2.623  1.00  0.00          N
ATOM     62  CA  ALA   24       12.252  16.907   3.874  1.00  0.00          C
ATOM     63  C   ALA   24       13.641  17.530   4.147  1.00  0.00          C
ATOM     64  O   ALA   24       13.692  18.666   4.648  1.00  0.00          O
ATOM     65  N   MET   25       14.671  16.723   4.008  1.00  0.00          N
ATOM     66  CA  MET   25       16.039  17.238   4.214  1.00  0.00          C
ATOM     67  C   MET   25       16.296  18.466   3.355  1.00  0.00          C
ATOM     68  O   MET   25       16.886  19.449   3.874  1.00  0.00          O
ATOM     69  N   ASP   26       15.875  18.473   2.084  1.00  0.00          N
ATOM     70  CA  ASP   26       16.003  19.672   1.248  1.00  0.00          C
ATOM     71  C   ASP   26       15.236  20.857   1.850  1.00  0.00          C
ATOM     72  O   ASP   26       15.791  21.953   1.855  1.00  0.00          O
ATOM     73  N   ASN   27       14.011  20.599   2.301  1.00  0.00          N
ATOM     74  CA  ASN   27       13.181  21.699   2.785  1.00  0.00          C
ATOM     75  C   ASN   27       13.709  22.307   4.078  1.00  0.00          C
ATOM     76  O   ASN   27       13.650  23.519   4.261  1.00  0.00          O
ATOM     77  N   LEU   28       14.207  21.462   4.963  1.00  0.00          N
ATOM     78  CA  LEU   28       14.776  21.967   6.245  1.00  0.00          C
ATOM     79  C   LEU   28       16.013  22.820   5.942  1.00  0.00          C
ATOM     80  O   LEU   28       16.187  23.863   6.615  1.00  0.00          O
ATOM     81  N   PRO   29       16.859  22.391   5.009  1.00  0.00          N
ATOM     82  CA  PRO   29       17.993  23.272   4.630  1.00  0.00          C
ATOM     83  C   PRO   29       17.486  24.638   4.122  1.00  0.00          C
ATOM     84  O   PRO   29       17.986  25.658   4.587  1.00  0.00          O
ATOM     85  N   PHE   30       16.473  24.645   3.295  1.00  0.00          N
ATOM     86  CA  PHE   30       15.866  25.878   2.753  1.00  0.00          C
ATOM     87  C   PHE   30       15.363  26.779   3.897  1.00  0.00          C
ATOM     88  O   PHE   30       15.693  27.990   3.978  1.00  0.00          O
ATOM     89  N   VAL   31       14.713  26.102   4.835  1.00  0.00          N
ATOM     90  CA  VAL   31       14.108  26.812   5.981  1.00  0.00          C
ATOM     91  C   VAL   31       15.166  27.527   6.805  1.00  0.00          C
ATOM     92  O   VAL   31       15.080  28.754   7.040  1.00  0.00          O
ATOM     93  N   TYR   32       16.261  26.844   7.104  1.00  0.00          N
ATOM     94  CA  TYR   32       17.379  27.470   7.812  1.00  0.00          C
ATOM     95  C   TYR   32       17.994  28.618   6.987  1.00  0.00          C
ATOM     96  O   TYR   32       18.242  29.688   7.571  1.00  0.00          O
ATOM     97  N   ASN   33       18.232  28.349   5.723  1.00  0.00          N
ATOM     98  CA  ASN   33       18.908  29.348   4.895  1.00  0.00          C
ATOM     99  C   ASN   33       18.014  30.583   4.737  1.00  0.00          C
ATOM    100  O   ASN   33       18.605  31.658   4.518  1.00  0.00          O
ATOM    101  N   THR   34       16.700  30.417   4.768  1.00  0.00          N
ATOM    102  CA  THR   34       15.764  31.545   4.658  1.00  0.00          C
ATOM    103  C   THR   34       15.581  32.306   5.963  1.00  0.00          C
ATOM    104  O   THR   34       14.802  33.286   6.056  1.00  0.00          O
ATOM    105  N   GLY   35       16.161  31.819   7.038  1.00  0.00          N
ATOM    106  CA  GLY   35       16.035  32.359   8.378  1.00  0.00          C
ATOM    107  C   GLY   35       14.677  32.146   9.017  1.00  0.00          C
ATOM    108  O   GLY   35       14.325  32.909   9.943  1.00  0.00          O
ATOM    109  N   TYR   36       13.942  31.152   8.597  1.00  0.00          N
ATOM    110  CA  TYR   36       12.648  30.740   9.172  1.00  0.00          C
ATOM    111  C   TYR   36       12.975  29.750  10.307  1.00  0.00          C
ATOM    112  O   TYR   36       13.839  28.865  10.214  1.00  0.00          O
ATOM    113  N   ASN   37       12.250  29.909  11.396  1.00  0.00          N
ATOM    114  CA  ASN   37       12.383  29.049  12.571  1.00  0.00          C
ATOM    115  C   ASN   37       11.995  27.608  12.216  1.00  0.00          C
ATOM    116  O   ASN   37       10.963  27.366  11.576  1.00  0.00          O
ATOM    117  N   ILE   38       12.850  26.700  12.614  1.00  0.00          N
ATOM    118  CA  ILE   38       12.705  25.268  12.419  1.00  0.00          C
ATOM    119  C   ILE   38       12.342  24.669  13.791  1.00  0.00          C
ATOM    120  O   ILE   38       13.038  24.998  14.773  1.00  0.00          O
ATOM    121  N   GLY   39       11.307  23.912  13.751  1.00  0.00          N
ATOM    122  CA  GLY   39       10.852  23.189  14.979  1.00  0.00          C
ATOM    123  C   GLY   39       10.778  21.710  14.677  1.00  0.00          C
ATOM    124  O   GLY   39        9.906  21.279  13.915  1.00  0.00          O
ATOM    125  N   TYR   40       11.673  20.929  15.284  1.00  0.00          N
ATOM    126  CA  TYR   40       11.734  19.501  14.945  1.00  0.00          C
ATOM    127  C   TYR   40       10.488  18.742  15.395  1.00  0.00          C
ATOM    128  O   TYR   40       10.353  17.580  14.979  1.00  0.00          O
ATOM    129  N   GLN   41        9.669  19.338  16.252  1.00  0.00          N
ATOM    130  CA  GLN   41        8.410  18.675  16.643  1.00  0.00          C
ATOM    131  C   GLN   41        7.504  18.478  15.427  1.00  0.00          C
ATOM    132  O   GLN   41        6.563  17.677  15.409  1.00  0.00          O
ATOM    133  N   ASN   42        7.771  19.287  14.402  1.00  0.00          N
ATOM    134  CA  ASN   42        6.932  19.384  13.217  1.00  0.00          C
ATOM    135  C   ASN   42        6.969  18.108  12.390  1.00  0.00          C
ATOM    136  O   ASN   42        6.024  17.862  11.611  1.00  0.00          O
ATOM    137  N   ALA   43        8.059  17.367  12.486  1.00  0.00          N
ATOM    138  CA  ALA   43        8.319  16.251  11.567  1.00  0.00          C
ATOM    139  C   ALA   43        8.125  14.877  12.171  1.00  0.00          C
ATOM    140  O   ALA   43        8.432  14.694  13.359  1.00  0.00          O
ATOM    141  N   ASN   44        7.858  13.928  11.300  1.00  0.00          N
ATOM    142  CA  ASN   44        7.614  12.539  11.733  1.00  0.00          C
ATOM    143  C   ASN   44        8.754  11.941  12.574  1.00  0.00          C
ATOM    144  O   ASN   44        8.434  11.123  13.456  1.00  0.00          O
ATOM    145  N   VAL   45        9.984  12.051  12.074  1.00  0.00          N
ATOM    146  CA  VAL   45       11.082  11.248  12.619  1.00  0.00          C
ATOM    147  C   VAL   45       12.146  12.037  13.371  1.00  0.00          C
ATOM    148  O   VAL   45       12.623  13.066  12.874  1.00  0.00          O
ATOM    149  N   TRP   46       12.670  11.381  14.390  1.00  0.00          N
ATOM    150  CA  TRP   46       13.884  11.867  15.069  1.00  0.00          C
ATOM    151  C   TRP   46       15.119  11.751  14.195  1.00  0.00          C
ATOM    152  O   TRP   46       16.143  12.429  14.428  1.00  0.00          O
ATOM    153  N   ARG   47       15.024  10.953  13.132  1.00  0.00          N
ATOM    154  CA  ARG   47       16.189  10.758  12.275  1.00  0.00          C
ATOM    155  C   ARG   47       16.441  11.999  11.435  1.00  0.00          C
ATOM    156  O   ARG   47       17.585  12.226  11.018  1.00  0.00          O
ATOM    157  N   ILE   48       15.405  12.836  11.256  1.00  0.00          N
ATOM    158  CA  ILE   48       15.607  14.104  10.539  1.00  0.00          C
ATOM    159  C   ILE   48       16.647  15.010  11.174  1.00  0.00          C
ATOM    160  O   ILE   48       17.629  15.333  10.468  1.00  0.00          O
ATOM    161  N   SER   49       16.549  15.434  12.431  1.00  0.00          N
ATOM    162  CA  SER   49       17.577  16.281  13.037  1.00  0.00          C
ATOM    163  C   SER   49       18.928  15.603  13.079  1.00  0.00          C
ATOM    164  O   SER   49       19.946  16.332  12.937  1.00  0.00          O
ATOM    165  N   GLY   50       18.984  14.288  13.218  1.00  0.00          N
ATOM    166  CA  GLY   50       20.294  13.597  13.153  1.00  0.00          C
ATOM    167  C   GLY   50       20.924  13.780  11.755  1.00  0.00          C
ATOM    168  O   GLY   50       22.120  14.156  11.707  1.00  0.00          O
ATOM    169  N   GLY   51       20.118  13.542  10.734  1.00  0.00          N
ATOM    170  CA  GLY   51       20.645  13.740   9.358  1.00  0.00          C
ATOM    171  C   GLY   51       21.018  15.177   9.057  1.00  0.00          C
ATOM    172  O   GLY   51       22.034  15.451   8.368  1.00  0.00          O
ATOM    173  N   PHE   52       20.170  16.097   9.522  1.00  0.00          N
ATOM    174  CA  PHE   52       20.503  17.522   9.303  1.00  0.00          C
ATOM    175  C   PHE   52       21.818  17.886  10.004  1.00  0.00          C
ATOM    176  O   PHE   52       22.595  18.620   9.380  1.00  0.00          O
TER
END


