
PFRMAT AL
TARGET T0089
AUTHOR 7770-2312-5826
REMARK GROUP NAME: SHESTOPALOV. EXPERT GROUP.
REMARK GROUP LEADER: Shestopalov Boris V. TEAM: NO.
REMARK E-mail: shest@mail.cytspb.rssi.ru
METHOD Secondary structures predicted by DOUBLET CODE METHOD
METHOD (see SHESTOPALOV, ab initio secondary structure category)
METHOD and also various information from protein data bases are used.
METHOD Here BLAST-2 service has been fruitful (Yan P. Yuan, 
METHOD Eulenstein, O., Vingron, M. & Bork, P. 1998. Towards 
METHOD detection of orthologues in sequence databases. Bioinformatics, 
METHOD 14, 285-289).
METHOD  
MODEL  1
PARENT 1dfm_A
E 47 Q 39
G 48 A 40
E 49 S 41
I 50 K 42
K 51 V 43
D 52 G 44
A 53 S 45
I 54 L 46
A 55 I 47
F 56 F 48
K 57 D 49
S 59 P 50
V 60 V 51
N 61 G 52
T 62 T 53
L 63 N 54
L 64 Q 55
K 65 Y 56
E 66 I 57
L 67 K 58
E 68 D 59
E 69 E 60
Q 70 L 61
L 71 V 62
Q 72 P 63
K 73 K 64
S 74 H 65
L 75 W 66
F 79 K 67
V 80 N 68
I 81 N 69
S 82 I 70
F 83 P 71
S 84 G 80
S 85 T 81
V 86 I 83
S 87 D 84
F 88 F 85
E 89 G 86
R 90 K 87
E 91 R 88
D 92 D 89
T 93 T 90
V 94 L 91
I 95 V 92
E 96 E 93
R 97 V 94
D 98 Q 95
F 99 F 96
S 105 S 97
T 107 N 98
L 108 Y 99
I 110 P 100
L 111 F 101
S 112 L 102
E 113 L 103
M 114 N 104
Q 115 N 105
S 116 T 106
E 117 V 107
A 118 R 108
L 119 S 109
E 120 E 110
K 121 L 111
L 122 F 112
K 123 H 113
E 124 K 114
N 125 S 115
G 126 N 116
K 127 X 117
T 128 D 118
P 129 I 119
L 130 A 127
H 131 I 128
I 132 I 129
F 133 I 130
S 134 T 131
K 135 K 132
TER
PARENT 1srd_A
V 181 T 2
K 182 K 3
S 183 K 4
F 185 A 5
Q 186 V 6
L 187 A 7
K 188 V 8
S 189 L 9
S 190 K 10
L 191 G 11
V 192 T 12
S 193 S 13
T 194 N 14
A 195 V 15
E 196 E 16
G 197 G 17
V 198 V 18
L 199 V 19
T 200 T 20
T 201 L 21
P 202 E 24
E 203 D 25
K 204 D 26
D 205 G 27
R 206 P 28
G 207 T 29
V 208 T 30
V 209 V 31
V 210 N 32
V 211 V 33
N 212 R 34
L 213 I 35
G 214 S 36
G 219 G 37
L 220 L 38
I 221 A 39
A 222 P 40
Y 223 G 41
K 224 K 42
N 225 H 43
G 226 G 44
I 229 F 45
K 230 H 46
I 231 L 47
S 232 H 48
Y 233 E 49
V 234 F 50
P 235 G 51
V 236 D 52
T 358 T 60
G 359 G 61
C 360 P 62
Y 361 H 63
A 362 F 64
N 363 N 65
S 364 P 66
D 365 D 67
R 366 K 68
P 367 K 69
S 368 T 70
I 369 H 71
N 371 G 72
A 372 A 73
D 373 P 74
E 374 E 75
N 377 D 76
D 378 E 77
P 379 V 78
S 380 R 79
F 381 H 80
A 382 A 81
A 383 G 82
A 384 D 83
F 385 L 84
G 386 G 85
N 387 N 86
V 388 I 87
F 389 V 88
A 390 A 89
E 393 N 90
N 394 T 91
P 395 D 92
Y 396 G 93
E 397 A 95
E 398 E 96
T 399 A 97
V 401 T 98
K 402 I 99
S 403 V 100
E 404 D 101
N 405 N 102
P 406 P 105
L 407 L 106
TER
END

