
PFRMAT AL
TARGET T0089
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=4.54 
REMARK CONFIDENCE: GUESS     (50% confidence [ ZSCORE>=3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1gnwa1
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and environment-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  2
PARENT 1gnw_A
V  86     L    86 
S  87     K    91 
F  88     N    92 
E  89     I    93 
R  90     S    94 
E  91     Q    95 
D  92     Y    96 
T  93     A    97 
V  94     I    98 
I  95     M    99 
E  96     A   100 
R  97     I   101 
D  98     G   102 
F  99     M   103 
G 100     Q   104 
E 101     V   105 
E 102     E   106 
K 103     D   107 
R 104     H   108 
S 105     Q   109 
I 106     F   110 
L 108     D   111 
D 109     P   112 
I 110     V   113 
L 111     A   114 
S 112     S   115 
E 113     K   116 
M 114     L   117 
Q 115     A   118 
S 116     F   119 
E 117     E   120 
A 118     Q   121 
I 132     I   122 
F 133     F   123 
S 134     K   124 
K 135     S   125 
R 136     I   126 
Y 137     Y   127 
L 138     G   128 
L 139     L   129 
D 140     T   130 
D 141     T   131 
E 142     D   132 
R 143     E   133 
I 144     A   134 
V 145     V   135 
F 146     V   136 
N 147     A   137 
P 148     E   138 
L 149     E   139 
D 150     E   140 
M 151     A   141 
K 152     K   142 
A 153     L   143 
S 154     A   144 
K 155     K   145 
I 156     V   146 
A 157     L   147 
I 158     D   148 
E 159     V   149 
Y 160     Y   150 
T 161     E   151 
S 162     A   152 
I 163     R   153 
V 164     L   154 
V 165     K   155 
P 166     E   156 
L 167     F   157 
K 168     K   158 
N 212     Y   159 
L 213     L   160 
G 214     A   161 
Y 215     G   162 
N 216     E   163 
F 217     T   164 
T 218     F   165 
G 219     T   166 
L 220     L   167 
I 221     T   168 
A 222     D   169 
Y 223     L   170 
K 224     H   171 
N 225     H   172 
G 226     I   173 
V 227     P   174 
P 228     A   175 
I 229     I   176 
K 230     Q   177 
K 308     P   183 
S 309     T   184 
K 310     K   185 
K 311     K   186 
F 312     L   187 
F 313     F   188 
R 314     T   189 
E 315     E   190 
V 316     R   191 
P 342     P   192 
R 343     R   193 
I 344     V   194 
N 345     N   195 
E 346     E   196 
L 347     W   197 
A 348     V   198 
T 349     A   199 
E 350     E   200 
V 351     I   201 
F 352     T   202 
K 353     K   203 
S 354     R   204 
P 355     P   205 
V 356     A   206 
R 357     S   207 
T 358     E   208 
G 359     K   209 
M 418     V   210 
E 419     Q   211 
TER
END

