
PFRMAT SS
TARGET T0089
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0089.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 62.5276
METHOD
MODEL 1
M C 0.807
I C 0.773
D C 0.720
L C 0.623
S C 0.611
K C 0.664
T C 0.811
V C 0.586
F E 0.864
Y E 0.963
T E 0.990
S E 0.986
I E 0.940
D E 0.677
I C 0.784
G C 0.887
S C 0.672
R C 0.596
Y E 0.530
I E 0.766
K E 0.887
G E 0.983
L E 0.983
V E 0.987
L E 0.970
G E 0.911
K E 0.756
R C 0.724
D C 0.910
Q C 0.941
E E 0.600
W E 0.902
E E 0.978
A E 0.993
L E 0.977
A E 0.904
F E 0.582
S C 0.653
S C 0.530
V C 0.550
K C 0.540
S C 0.524
R C 0.545
G C 0.586
L C 0.632
D C 0.621
E C 0.637
G C 0.804
E C 0.665
I C 0.567
K C 0.642
D C 0.725
A H 0.977
I H 0.989
A H 0.993
F H 0.992
K H 0.995
E H 0.995
S H 0.995
V H 0.991
N H 0.991
T H 0.987
L H 0.977
L H 0.981
K H 0.979
E H 0.972
L H 0.958
E H 0.961
E H 0.951
Q H 0.906
L H 0.818
Q C 0.896
K C 0.838
S C 0.494
L C 0.490
R C 0.685
S C 0.785
D C 0.583
F E 0.782
V E 0.879
I E 0.896
S E 0.750
F C 0.537
S C 0.808
S C 0.834
V C 0.720
S C 0.486
F E 0.539
E E 0.647
R E 0.623
E C 0.500
D C 0.558
T E 0.566
V E 0.818
I E 0.950
E E 0.969
R E 0.965
D E 0.867
F E 0.615
G C 0.724
E C 0.914
E C 0.901
K C 0.880
R C 0.764
S E 0.495
I E 0.580
T C 0.695
L H 0.935
D H 0.956
I H 0.976
L H 0.980
S H 0.988
E H 0.990
M H 0.989
Q H 0.982
S H 0.982
E H 0.964
A H 0.931
L H 0.900
E H 0.769
K H 0.593
L C 0.656
K C 0.805
E C 0.922
N C 0.917
G C 0.806
K E 0.604
T E 0.876
P E 0.961
L E 0.946
H E 0.902
I E 0.839
F E 0.630
S C 0.620
K H 0.465
R H 0.661
Y H 0.699
L H 0.559
L H 0.438
D H 0.445
D C 0.545
E C 0.560
R C 0.547
I C 0.694
V C 0.796
F C 0.748
N C 0.851
P C 0.736
L C 0.693
D C 0.706
M C 0.514
K E 0.606
A E 0.610
S E 0.676
K E 0.829
I E 0.900
A E 0.920
I E 0.922
E E 0.947
Y E 0.978
T E 0.981
S E 0.974
I E 0.910
V E 0.653
V C 0.708
P C 0.785
L H 0.579
K H 0.770
V H 0.952
Y H 0.973
E H 0.989
M H 0.991
F H 0.997
Y H 0.998
N H 0.997
F H 0.995
L H 0.993
Q H 0.992
D H 0.980
T H 0.948
V C 0.900
K C 0.964
S C 0.594
P E 0.600
F E 0.604
Q E 0.642
L E 0.656
K E 0.627
S E 0.479
S H 0.461
L H 0.592
V H 0.841
S H 0.885
T H 0.896
A H 0.891
E H 0.876
G H 0.841
V H 0.672
L C 0.756
T C 0.907
T C 0.805
P H 0.504
E H 0.595
K H 0.515
D C 0.625
R C 0.813
G C 0.926
V E 0.725
V E 0.973
V E 0.990
V E 0.968
N E 0.751
L C 0.844
G C 0.960
Y C 0.936
N C 0.922
F C 0.656
T C 0.508
G E 0.773
L E 0.966
I E 0.988
A E 0.994
Y E 0.970
K E 0.824
N C 0.789
G C 0.932
V C 0.555
P E 0.748
I E 0.802
K E 0.817
I C 0.537
S C 0.762
Y C 0.563
V E 0.471
P C 0.564
V C 0.565
G C 0.750
M H 0.582
K H 0.651
H H 0.697
V H 0.752
I H 0.827
K H 0.978
D H 0.978
V H 0.979
S H 0.975
A H 0.967
V H 0.929
L H 0.891
D C 0.555
T C 0.808
S C 0.855
F H 0.927
E H 0.951
E H 0.961
S H 0.976
E H 0.981
R H 0.978
L H 0.954
I H 0.926
I H 0.864
T H 0.780
H H 0.613
G H 0.459
N C 0.524
A C 0.624
V C 0.687
Y C 0.710
N C 0.735
D C 0.730
L C 0.823
K C 0.816
E C 0.735
E E 0.480
E E 0.671
I E 0.719
Q E 0.653
Y E 0.593
R C 0.485
G C 0.606
L C 0.787
D C 0.908
G C 0.844
N C 0.800
T C 0.723
I C 0.559
K E 0.701
T E 0.761
T E 0.782
T C 0.647
A H 0.943
K H 0.977
K H 0.992
L H 0.987
S H 0.992
V H 0.991
I H 0.991
I H 0.983
H H 0.986
A H 0.988
R H 0.983
L H 0.990
R H 0.993
E H 0.994
I H 0.995
M H 0.993
S H 0.995
K H 0.994
S H 0.996
K H 0.997
K H 0.997
F H 0.994
F H 0.991
R H 0.983
E H 0.977
V H 0.945
E H 0.630
A C 0.708
K H 0.552
I H 0.695
V H 0.818
E H 0.835
E H 0.817
G H 0.627
E C 0.551
I C 0.619
G C 0.702
I C 0.789
P C 0.863
G C 0.915
G E 0.615
V E 0.962
V E 0.978
L E 0.955
T E 0.767
G C 0.574
G C 0.697
G C 0.583
A C 0.466
K C 0.506
I C 0.691
P H 0.502
R H 0.722
I H 0.942
N H 0.973
E H 0.983
L H 0.983
A H 0.983
T H 0.979
E H 0.965
V H 0.936
F H 0.865
K C 0.961
S C 0.918
P C 0.699
V C 0.495
R E 0.593
T E 0.710
G E 0.656
C E 0.615
Y E 0.498
A C 0.532
N C 0.626
S C 0.692
D C 0.818
R C 0.849
P C 0.735
S C 0.632
I C 0.559
I C 0.590
N C 0.802
A C 0.769
D C 0.679
E H 0.559
V H 0.525
A H 0.470
N C 0.716
D C 0.935
P H 0.716
S H 0.874
F H 0.936
A H 0.932
A H 0.955
A H 0.973
F H 0.983
G H 0.985
N H 0.990
V H 0.990
F H 0.981
A H 0.958
V H 0.874
S H 0.727
E C 0.553
N C 0.756
P C 0.708
Y C 0.672
E C 0.658
E C 0.633
T C 0.590
P C 0.537
V C 0.569
K C 0.636
S C 0.703
E C 0.574
N C 0.472
P H 0.634
L H 0.753
K H 0.831
K H 0.851
I H 0.935
F H 0.945
R H 0.953
L H 0.903
F H 0.961
K H 0.928
E H 0.859
L H 0.646
M C 0.666
E C 0.947
END

