
PFRMAT AL
TARGET T0091
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=2.43 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: cyto
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and environment-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  3
PARENT 1bgd
F   2     L    10 
G   3     P    11 
K   4     Q    12 
G   5     S    13 
G   6     F    14 
L   7     L    15 
G   8     L    16 
G   9     K    17 
L  10     C    18 
M  11     L    19 
K  12     E    20 
Q  13     Q    21 
A  14     M    22 
Q  15     R    23 
Q  16     K    24 
M  17     V    25 
Q  18     Q    26 
E  19     A    27 
K  20     D    28 
M  21     G    29 
Q  22     T    30 
K  23     A    31 
M  24     L    32 
Q  25     Q    33 
E  26     E    34 
E  27     T    35 
I  28     L    36 
A  29     C    37 
Q  30     A    38 
L  31     T    39 
E  32     H    40 
V  33     Q    41 
T  34     L    42 
G  35     C    43 
E  36     H    44 
S  37     P    45 
G  38     E    46 
A  39     E    47 
G  40     L    48 
L  41     V    49 
V  42     L    50 
K  43     L    51 
I  44     G    52 
T  45     H    53 
I  46     A    54 
N  47     L    55 
G  48     G    56 
A  49     L    70 
H  50     Q    71 
N  51     L    72 
C  52     M    73 
R  53     G    74 
R  54     C    75 
I  55     L    76 
D  56     R    77 
I  57     Q    78 
D  58     L    79 
P  59     H    80 
S  60     S    81 
L  61     G    82 
M  62     L    83 
E  63     F    84 
D  64     L    85 
D  65     Y    86 
K  66     Q    87 
E  67     G    88 
M  68     L    89 
L  69     L    90 
E  70     Q    91 
D  71     A    92 
L  72     L    93 
I  73     L   100 
A  74     A   101 
A  75     P   102 
A  76     T   103 
F  77     L   104 
N  78     D   105 
D  79     T   106 
A  80     L   107 
V  81     Q   108 
R  82     L   109 
R  83     D   110 
A  84     T   111 
E  85     T   112 
E  86     D   113 
L  87     F   114 
Q  88     A   115 
K  89     I   116 
E  90     N   117 
K  91     I   118 
M  92     W   119 
A  93     Q   120 
S  94     Q   121 
V  95     M   122 
T  96     E   123 
A  97     D   124 
G  98     L   125 
M  99     G   126 
P 100     M   127 
L 101     A   128 
P 102     P   129 
P 103     T   137 
G 104     M   138 
M 105     P   139 
K 106     A   140 
F 107     F   141 
P 108     T   142 
F 109     S   143 
TER
END

