
PFRMAT AL
TARGET T0091
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=2.24 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: proteasome
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and environment-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  5
PARENT 1ryp_J
M   1     K   106 
F   2     S   107 
G   3     G   108 
K   4     K   109 
G   5     P   110 
G   6     F   111 
L   7     I   112 
G   8     A   113 
G   9     G   114 
L  10     F   115 
M  11     D   116 
K  12     L   117 
Q  13     I   118 
A  14     G   119 
Q  15     C   120 
Q  16     I   121 
M  17     D   122 
Q  18     E   123 
E  19     A   124 
M  21     K   125 
Q  22     D   126 
K  23     F   127 
M  24     I   128 
Q  25     V   129 
E  26     S   130 
E  27     G   131 
I  28     T   132 
A  29     A   133 
Q  30     S   134 
L  31     D   135 
E  32     Q   136 
V  33     L   137 
T  34     F   138 
G  35     G   139 
E  36     M   140 
S  37     C   141 
G  38     E   142 
A  39     S   143 
G  40     L   144 
L  41     Y   145 
V  42     E   146 
K  43     P   147 
L  61     N   148 
M  62     L   149 
E  63     E   150 
K  66     P   151 
E  67     E   152 
M  68     D   153 
L  69     L   154 
E  70     F   155 
D  71     E   156 
L  72     T   157 
I  73     I   158 
A  74     S   159 
A  75     Q   160 
A  76     A   161 
F  77     L   162 
N  78     L   163 
D  79     N   164 
A  80     A   165 
V  81     A   166 
R  82     D   167 
R  83     R   168 
A  84     D   169 
E  85     A   170 
E  86     L   171 
L  87     S   172 
Q  88     G   173 
K  89     W   174 
A  93     G   175 
S  94     A   176 
V  95     V   177 
T  96     V   178 
A  97     Y   179 
G  98     I   180 
M  99     I   181 
P 100     K   182 
L 101     K   183 
P 103     D   184 
G 104     E   185 
M 105     V   186 
K 106     V   187 
F 107     K   188 
P 108     R   189 
F 109     Y   190 
TER
END

