
PFRMAT AL
TARGET T0091
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 1
PARENT 1set_A
M    1 M 1
F    2 K 21
G    3 G 22
K    4 V 23
G    5 A 24
G    6 D 26
L    7 L 27
G    8 E 28
G    9 A 29
L   10 L 30
M   11 L 31
K   12 A 32
Q   13 E 36
A   14 V 37
Q   15 Q 38
Q   16 E 39
M   17 L 40
Q   18 K 41
E   19 K 42
K   20 R 43
M   21 L 44
Q   22 Q 45
K   23 E 46
M   24 V 47
Q   25 Q 48
E   26 T 49
E   27 E 50
I   28 R 51
A   29 N 52
Q   30 Q 53
L   31 V 54
E   32 A 55
R   53 K 56
R   54 R 57
I   55 V 58
P   59 P 59
S   60 K 60
L   61 A 61
M   62 P 62
E   63 P 63
D   64 E 64
D   65 E 65
K   66 K 66
E   67 E 67
M   68 A 68
L   69 L 69
E   70 I 70
D   71 A 71
L   72 R 72
I   73 G 73
A   74 K 74
A   75 A 75
A   76 L 76
F   77 G 77
N   78 E 78
D   79 E 79
A   80 A 80
V   81 K 81
R   82 R 82
R   83 L 83
A   84 E 84
E   85 E 85
E   86 A 86
L   87 L 87
Q   88 R 88
K   89 E 91
E   90 A 92
K   91 R 93
M   92 L 94
A   93 E 95
S   94 A 96
V   95 L 97
T   96 L 98
A   97 L 99
G   98 Q 100
M   99 V 101
P  100 P 102
L  101 L 103
P  102 P 104
P  103 P 105
G  104 W 106
M  105 P 107
K  106 G 108
F  107 A 109
P  108 P 110
TER
END

