
PFRMAT AL
TARGET T0091
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 3
PARENT 1dd5_A
L    7 V 2
G    8 N 3
G    9 P 4
L   10 F 5
M   11 I 6
K   12 K 7
Q   13 E 8
A   14 A 9
Q   15 K 10
Q   16 E 11
M   17 M 13
Q   18 K 14
E   19 R 15
K   20 T 16
M   21 L 17
Q   22 E 18
K   23 K 19
M   24 I 20
Q   25 E 21
E   26 D 22
E   27 E 23
I   28 L 37
A   29 E 38
Q   30 E 39
L   31 I 40
E   32 K 41
V   33 V 42
T   34 D 43
G   35 Y 44
E   36 Y 45
S   37 G 46
G   38 V 51
A   39 N 52
G   40 Q 53
L   41 L 54
V   42 A 55
K   43 T 56
I   44 I 57
T   45 S 58
I   46 I 59
N   47 S 60
G   48 E 61
A   49 E 62
H   50 R 63
N   51 T 64
C   52 L 65
R   53 V 66
R   54 I 67
I   55 K 68
D   56 P 69
I   57 W 70
D   58 D 71
P   59 K 72
S   60 S 73
L   61 V 74
M   62 L 75
E   63 D 94
D   64 G 95
D   65 N 96
K   66 K 118
E   67 E 119
M   68 I 120
L   69 V 121
E   70 E 122
D   71 E 123
L   72 G 124
I   73 K 125
A   74 I 126
A   75 A 127
A   76 I 128
F   77 R 129
N   78 N 130
D   79 E 134
A   80 I 135
V   81 L 136
R   82 K 137
R   83 K 138
A   84 I 139
E   85 K 140
E   86 E 141
L   87 D 142
Q   88 Q 143
K   89 K 144
E   90 E 145
K   91 K 179
M   92 E 180
A   93 E 181
S   94 I 182
V   95 M 183
T   96 E 184
A   97 F 185
TER
END

