
PFRMAT AL
TARGET T0091
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 4
PARENT 2spc_A
G    3 Q 0
K    4 N 1
G    5 L 2
G    6 D 3
L    7 L 4
G    8 Q 5
G    9 L 6
L   10 Y 7
M   11 M 8
K   12 R 9
Q   13 D 10
A   14 C 11
Q   15 E 12
Q   16 L 13
M   17 A 14
Q   18 E 15
E   19 S 16
K   20 W 17
M   21 M 18
Q   22 S 19
M   24 A 20
Q   25 R 21
E   26 E 22
E   27 A 23
I   28 F 24
A   29 L 25
Q   30 N 26
L   31 A 27
E   32 D 28
V   33 D 29
T   34 D 30
G   35 A 31
E   36 N 32
S   37 A 33
G   38 G 34
A   39 G 35
G   40 N 36
V   42 V 37
K   43 E 38
I   44 A 39
T   45 L 40
I   46 I 41
N   47 K 42
A   49 K 43
H   50 H 44
N   51 E 45
D   56 D 46
I   57 F 47
D   58 D 48
P   59 K 49
S   60 A 50
L   61 I 51
M   62 H 54
E   63 E 55
D   64 Q 56
D   65 K 57
K   66 I 58
E   67 A 59
M   68 A 60
L   69 L 61
E   70 Q 62
D   71 D 66
L   72 Q 67
I   73 L 68
A   74 I 69
A   75 A 70
A   76 Q 71
F   77 N 72
N   78 H 73
D   79 Y 74
A   80 A 75
V   81 S 76
R   82 N 77
R   83 L 78
A   84 V 79
E   85 D 80
E   86 E 81
L   87 K 82
Q   88 R 83
K   89 K 84
E   90 Q 85
K   91 V 86
M   92 L 87
A   93 E 88
S   94 E 99
V   95 K 100
T   96 R 101
A   97 S 102
G   98 R 103
M   99 L 104
P  100 G 105
L  101 D 106
TER
END

