
PFRMAT AL
TARGET T0091
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  2
PARENT 1by1_A
Q  25    S 121
E  26    E 122
E  27    E 123
I  28    L 124
A  29    G 125
Q  30    E 126
L  31    M 128
E  32    E 129
V  33    T 130
T  34    K 131
G  35    G 132
E  36    A 133
S  37    S 134
G  38    S 135
A  39    P 136
G  40    G 137
L  41    I 138
V  42    L 139
K  43    V 140
I  44    L 141
T  45    T 142
I  46    T 143
N  47    G 144
G  48    L 145
A  49    S 146
H  50    K 147
N  51    P 148
C  52    F 149
R  53    M 150
R  54    R 151
I  55    L 152
D  56    D 153
I  57    K 154
D  58    Y 155
P  59    P 156
S  60    T 157
L  61    L 158
M  62    L 159
E  63    K 160
D  64    E 161
D  65    L 162
A  75    A 181
A  76    A 182
F  77    F 183
N  78    K 184
D  79    N 185
A  80    L 186
V  81    S 187
R  82    A 188
R  83    Q 189
A  84    C 190
E  85    Q 191
E  86    E 192
L  87    V 193
Q  88    R 194
K  89    K 195
E  90    R 196
K  91    K 197
M  92    E 198
TER
END


