
PFRMAT AL
TARGET T0091
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  3
PARENT 1sry_A
E  70    E  67
D  71    A  68
L  72    L  69
I  73    I  70
A  74    A  71
A  75    K  74
A  76    A  75
F  77    L  76
N  78    G  77
D  79    E  78
A  80    E  79
V  81    A  80
R  82    K  81
R  83    R  82
A  84    L  83
E  85    E  84
E  86    E  85
L  87    A  86
Q  88    L  87
K  89    R  88
E  90    E  89
K  91    K  90
M  92    E  91
A  93    A  92
S  94    R  93
V  95    L  94
T  96    E  95
A  97    A  96
G  98    Q 100
M  99    V 101
P 100    P 102
L 101    L 103
P 102    P 104
P 103    P 105
G 104    W 106
TER
END


