
PFRMAT AL
TARGET T0091
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  4
PARENT 2mys_A
M   1    I 177
F   2    T 178
G   3    G 179
K   4    E 180
G   5    S 181
G   6    G 182
L   7    A 183
G   8    G 184
G   9    K 185
L  10    T 186
M  11    V 187
K  12    N 188
Q  13    T 189
Q  15    R 191
Q  16    V 192
M  17    I 193
Q  18    Q 194
G  40    G 216
L  41    T 217
V  42    L 218
K  43    E 219
I  44    D 220
T  45    Q 221
I  46    I 222
N  47    I 223
G  48    S 224
A  49    A 225
H  50    N 226
N  51    P 227
C  52    L 228
R  53    L 229
R  54    E 230
I  55    A 231
D  56    F 232
I  57    G 233
D  58    N 234
P  59    A 235
S  60    T 237
L  61    V 238
M  62    R 239
E  63    N 240
D  64    D 241
D  65    N 242
K  66    S 243
E  67    S 244
M  68    R 245
L  69    F 246
E  70    G 247
L  72    F 249
I  73    I 250
A  74    R 251
A  75    I 252
A  76    H 253
F  77    F 254
N  78    G 255
D  79    A 256
A  80    T 257
V  81    G 258
R  82    K 259
R  83    L 260
A  84    A 261
E  85    S 262
E  86    A 263
L  87    D 264
Q  88    I 265
K  89    E 266
E  90    T 267
K  91    Y 268
M  92    L 269
A  93    L 270
S  94    E 271
V  95    V 275
T  96    T 276
A  97    F 277
G  98    Q 278
M  99    L 279
P 100    P 280
TER
END


