
PFRMAT AL
TARGET T0091
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  5
PARENT 2snm
Q  15    K  63
Q  16    K  64
M  17    M  65
Q  18    K  66
E  19    E  67
K  20    N  68
M  21    A  69
Q  22    K  70
K  23    K  71
M  24    I  72
Q  25    E  73
E  26    V  74
E  27    E  75
I  28    F  76
A  29    D  77
Q  30    K  78
L  31    G  79
E  32    Q  80
V  33    R  81
T  34    T  82
G  35    D  83
E  36    K  84
S  37    Y  85
G  38    G  86
A  39    R  87
G  40    G  88
L  41    L  89
V  42    A  90
K  43    Y  91
I  44    I  92
TER
END


