
PFRMAT SS
TARGET T0091
AUTHOR 6153-6797-7392
METHOD The nearest neighbour method based on the FFAS
METHOD profile-profile matching algorithm.
METHOD 
METHOD The FFAS sequence profile method is described in:
METHOD 
METHOD Rychlewski, L., Jaroszewski, L., Li, W. & Godzik, A. (2000). 
METHOD "Comparison of sequence profiles. Strategies for structural
METHOD predictions using sequence information". Protein Science 9, 232-241 
METHOD 
METHOD The prototype of the secondary structure prediction
METHOD method is described in:
METHOD Rychlewski, L., and Godzik. A, (1997) 
METHOD "Secondary structure prediction using segment similarity", 
METHOD Protein Eng 10, 1143-1153 
METHOD 
METHOD The detailed description of the method will be a subject
METHOD of the separate publication.
METHOD 
MODEL 1
M C 0.44
F C 0.56
G C 0.89
K C 0.89
G C 0.89
G C 0.89
L H 0.89
G H 1.00
G H 0.89
L H 1.00
M H 1.00
K H 0.89
Q H 0.89
A H 0.89
Q H 0.89
Q H 0.89
M H 0.89
Q H 0.89
E H 1.00
K H 1.00
M H 1.00
Q H 1.00
K H 0.89
M H 0.89
Q H 1.00
E H 1.00
E H 1.00
I H 1.00
A H 0.89
Q H 0.89
L H 0.78
E H 0.67
V H 0.56
T C 0.78
G C 0.78
E C 0.67
S C 0.78
G C 1.00
A C 1.00
G C 0.89
L E 1.00
V E 1.00
K E 0.89
I E 1.00
T E 0.89
I E 0.78
N C 0.78
G C 0.89
A C 0.89
H C 0.78
N E 0.67
C E 0.78
R E 0.89
R E 0.89
I E 0.78
D E 0.67
I C 0.78
D C 0.89
P C 0.78
S C 0.67
L H 0.67
M H 0.67
E H 0.78
D H 0.78
D H 0.78
K H 0.89
E H 0.89
M H 0.89
L H 1.00
E H 1.00
D H 1.00
L H 1.00
I H 1.00
A H 1.00
A H 1.00
A H 1.00
F H 1.00
N H 1.00
D H 1.00
A H 0.89
V H 1.00
R H 0.89
R H 0.89
A H 0.89
E H 0.89
E H 0.89
L H 0.89
Q H 0.89
K H 0.89
E H 0.78
K H 0.78
M H 0.89
A H 0.89
S H 0.89
V H 0.78
T H 0.67
A C 0.89
G C 0.89
M C 0.89
P C 1.00
L C 0.89
P C 1.00
P C 1.00
G C 0.89
M C 0.89
K C 0.78
F C 0.67
P C 0.67
F C 0.67
END
 - - - - - - - - - - - - - - - - - -
 Lukasz Jaroszewski, Ph. D.
 The Burnham Institute,
 10901 North Torrey Pines Road,
 La Jolla, CA 92037, USA
 phone +1 (858) 646 3100 ext. 3553
 fax  +1 (858) 646 3171
 - - - - - - - - - - - - - - - - - -

