
PFRMAT TS 
TARGET T0091
AUTHOR 1395-2891-7461
REMARK
REMARK Ugo Bastolla, Jochen Farwer and Ernst-Walter Knapp
REMARK Freie Universitaet Berlin, Institute of Crystallography
REMARK
METHOD For all fragments of the given sequence with length
METHOD between 35 and 85 residues, decoy structures were generated by
METHOD threading using a set of 1015 proteins (Hobohm U, Sander C.
METHOD Enlarged representative set of protein structure.
METHOD Protein Sci 1994; 3: 522-524. List available at
METHOD ftp://ftp.embl-heidelberg.de/pub/databases/
METHOD protein_extras/pdb_select/recent.pdb_select).
METHOD For all fragments the decoy structure of lowest energy was determined
METHOD using a modification of the energy function described in
METHOD (Bastolla U, Vendruscolo M,
METHOD Knapp EW.
METHOD A statistical mechanical method to optimize energy functions for
METHOD protein folding.
METHOD Proc Natl Acad Sci USA 2000, 97: 3977-3981).
METHOD The z scores of all the lowest energy structures were calculated.
METHOD As a control secondary structure was predicted using NNSSP
METHOD (Salamov A.A., Solovyev V.V.
METHOD Prediction of protein secondary sturcture by combining
METHOD nearest-neighbor algorithms and multiple sequence alignments.
METHOD J.Mol.Biol.,1995, 247, 11-15.).
METHOD The most stable 52-residue fragment was chosen for the prediction.
MODEL 1
PARENT 1csn
ATOM      1  N   GLY    9      -34.420  61.388  48.557  1.00  0.00          N
ATOM      2  CA  GLY    9      -34.093  59.968  48.492  1.00  0.00          C
ATOM      3  C   GLY    9      -32.989  59.637  49.473  1.00  0.00          C
ATOM      4  O   GLY    9      -32.012  60.371  49.591  1.00  0.00          O
ATOM      5  N   LEU   10      -33.140  58.524  50.174  1.00  0.00          N
ATOM      6  CA  LEU   10      -32.147  58.093  51.150  1.00  0.00          C
ATOM      7  C   LEU   10      -31.921  56.582  51.078  1.00  0.00          C
ATOM      8  O   LEU   10      -32.554  55.884  50.292  1.00  0.00          O
ATOM      9  N   MET   11      -30.966  56.103  51.863  1.00  0.00          N
ATOM     10  CA  MET   11      -30.660  54.691  51.946  1.00  0.00          C
ATOM     11  C   MET   11      -30.817  54.377  53.425  1.00  0.00          C
ATOM     12  O   MET   11      -30.386  55.151  54.281  1.00  0.00          O
ATOM     13  N   LYS   12      -31.488  53.270  53.714  1.00  0.00          N
ATOM     14  CA  LYS   12      -31.729  52.851  55.082  1.00  0.00          C
ATOM     15  C   LYS   12      -31.045  51.505  55.309  1.00  0.00          C
ATOM     16  O   LYS   12      -31.308  50.520  54.605  1.00  0.00          O
ATOM     17  N   GLN   13      -30.139  51.491  56.276  1.00  0.00          N
ATOM     18  CA  GLN   13      -29.387  50.305  56.626  1.00  0.00          C
ATOM     19  C   GLN   13      -30.002  49.664  57.863  1.00  0.00          C
ATOM     20  O   GLN   13      -30.084  50.289  58.923  1.00  0.00          O
ATOM     21  N   ALA   14      -30.480  48.436  57.694  1.00  0.00          N
ATOM     22  CA  ALA   14      -31.081  47.670  58.771  1.00  0.00          C
ATOM     23  C   ALA   14      -30.040  46.703  59.298  1.00  0.00          C
ATOM     24  O   ALA   14      -29.424  45.956  58.532  1.00  0.00          O
ATOM     25  N   GLN   15      -29.860  46.713  60.612  1.00  0.00          N
ATOM     26  CA  GLN   15      -28.900  45.847  61.267  1.00  0.00          C
ATOM     27  C   GLN   15      -29.560  45.117  62.416  1.00  0.00          C
ATOM     28  O   GLN   15      -30.118  45.744  63.314  1.00  0.00          O
ATOM     29  N   GLN   16      -29.551  43.779  62.379  1.00  0.00          N
ATOM     30  CA  GLN   16      -30.145  42.946  63.430  1.00  0.00          C
ATOM     31  C   GLN   16      -29.374  43.122  64.733  1.00  0.00          C
ATOM     32  O   GLN   16      -28.146  43.100  64.730  1.00  0.00          O
ATOM     33  N   MET   17      -30.076  43.313  65.840  1.00  0.00          N
ATOM     34  CA  MET   17      -29.397  43.483  67.121  1.00  0.00          C
ATOM     35  C   MET   17      -28.991  42.116  67.675  1.00  0.00          C
ATOM     36  O   MET   17      -29.739  41.499  68.429  1.00  0.00          O
ATOM     37  N   GLN   18      -27.814  41.634  67.289  1.00  0.00          N
ATOM     38  CA  GLN   18      -27.342  40.336  67.755  1.00  0.00          C
ATOM     39  C   GLN   18      -25.890  40.405  68.190  1.00  0.00          C
ATOM     40  O   GLN   18      -25.136  41.249  67.716  1.00  0.00          O
ATOM     41  N   GLU   19      -25.503  39.481  69.065  1.00  0.00          N
ATOM     42  CA  GLU   19      -24.149  39.403  69.615  1.00  0.00          C
ATOM     43  C   GLU   19      -23.013  39.537  68.603  1.00  0.00          C
ATOM     44  O   GLU   19      -22.083  40.318  68.802  1.00  0.00          O
ATOM     45  N   LYS   20      -23.096  38.781  67.517  1.00  0.00          N
ATOM     46  CA  LYS   20      -22.055  38.811  66.497  1.00  0.00          C
ATOM     47  C   LYS   20      -22.221  39.874  65.405  1.00  0.00          C
ATOM     48  O   LYS   20      -21.571  39.799  64.361  1.00  0.00          O
ATOM     49  N   MET   21      -23.074  40.862  65.639  1.00  0.00          N
ATOM     50  CA  MET   21      -23.279  41.910  64.647  1.00  0.00          C
ATOM     51  C   MET   21      -22.576  43.208  65.049  1.00  0.00          C
ATOM     52  O   MET   21      -22.377  43.484  66.237  1.00  0.00          O
ATOM     53  N   GLN   22      -22.151  44.005  64.056  1.00  0.00          N
ATOM     54  CA  GLN   22      -21.468  45.273  64.327  1.00  0.00          C
ATOM     55  C   GLN   22      -22.448  46.326  64.841  1.00  0.00          C
ATOM     56  O   GLN   22      -23.522  46.523  64.264  1.00  0.00          O
ATOM     57  N   LYS   23      -22.088  46.984  65.939  1.00  0.00          N
ATOM     58  CA  LYS   23      -22.943  48.010  66.526  1.00  0.00          C
ATOM     59  C   LYS   23      -23.119  49.205  65.589  1.00  0.00          C
ATOM     60  O   LYS   23      -22.189  49.981  65.359  1.00  0.00          O
ATOM     61  N   MET   24      -24.333  49.355  65.069  1.00  0.00          N
ATOM     62  CA  MET   24      -24.653  50.436  64.144  1.00  0.00          C
ATOM     63  C   MET   24      -24.539  51.830  64.775  1.00  0.00          C
ATOM     64  O   MET   24      -24.335  52.812  64.063  1.00  0.00          O
ATOM     65  N   GLN   25      -24.650  51.923  66.100  1.00  0.00          N
ATOM     66  CA  GLN   25      -24.539  53.225  66.757  1.00  0.00          C
ATOM     67  C   GLN   25      -23.134  53.789  66.582  1.00  0.00          C
ATOM     68  O   GLN   25      -22.949  55.007  66.465  1.00  0.00          O
ATOM     69  N   GLU   26      -22.151  52.896  66.535  1.00  0.00          N
ATOM     70  CA  GLU   26      -20.767  53.301  66.349  1.00  0.00          C
ATOM     71  C   GLU   26      -20.588  53.878  64.950  1.00  0.00          C
ATOM     72  O   GLU   26      -19.930  54.908  64.775  1.00  0.00          O
ATOM     73  N   GLU   27      -21.192  53.233  63.958  1.00  0.00          N
ATOM     74  CA  GLU   27      -21.100  53.725  62.594  1.00  0.00          C
ATOM     75  C   GLU   27      -21.761  55.103  62.518  1.00  0.00          C
ATOM     76  O   GLU   27      -21.326  55.976  61.767  1.00  0.00          O
ATOM     77  N   ILE   28      -22.817  55.285  63.306  1.00  0.00          N
ATOM     78  CA  ILE   28      -23.536  56.548  63.366  1.00  0.00          C
ATOM     79  C   ILE   28      -22.599  57.615  63.934  1.00  0.00          C
ATOM     80  O   ILE   28      -22.427  58.687  63.339  1.00  0.00          O
ATOM     81  N   ALA   29      -21.989  57.311  65.078  1.00  0.00          N
ATOM     82  CA  ALA   29      -21.052  58.229  65.719  1.00  0.00          C
ATOM     83  C   ALA   29      -19.993  58.664  64.714  1.00  0.00          C
ATOM     84  O   ALA   29      -19.771  59.859  64.523  1.00  0.00          O
ATOM     85  N   GLN   30      -19.389  57.691  64.036  1.00  0.00          N
ATOM     86  CA  GLN   30      -18.359  57.950  63.034  1.00  0.00          C
ATOM     87  C   GLN   30      -18.837  58.867  61.900  1.00  0.00          C
ATOM     88  O   GLN   30      -18.099  59.744  61.444  1.00  0.00          O
ATOM     89  N   LEU   31      -20.065  58.660  61.438  1.00  0.00          N
ATOM     90  CA  LEU   31      -20.617  59.490  60.371  1.00  0.00          C
ATOM     91  C   LEU   31      -20.719  60.934  60.840  1.00  0.00          C
ATOM     92  O   LEU   31      -20.479  61.872  60.074  1.00  0.00          O
ATOM     93  N   GLU   32      -21.091  61.110  62.101  1.00  0.00          N
ATOM     94  CA  GLU   32      -21.233  62.446  62.642  1.00  0.00          C
ATOM     95  C   GLU   32      -19.871  63.120  62.721  1.00  0.00          C
ATOM     96  O   GLU   32      -19.690  64.246  62.252  1.00  0.00          O
ATOM     97  N   VAL   33      -18.896  62.359  63.200  1.00  0.00          N
ATOM     98  CA  VAL   33      -17.521  62.814  63.341  1.00  0.00          C
ATOM     99  C   VAL   33      -16.912  63.213  61.993  1.00  0.00          C
ATOM    100  O   VAL   33      -16.055  64.095  61.929  1.00  0.00          O
ATOM    101  N   THR   34      -17.388  62.603  60.914  1.00  0.00          N
ATOM    102  CA  THR   34      -16.873  62.907  59.583  1.00  0.00          C
ATOM    103  C   THR   34      -17.796  63.818  58.777  1.00  0.00          C
ATOM    104  O   THR   34      -17.553  64.063  57.590  1.00  0.00          O
ATOM    105  N   GLY   35      -18.861  64.303  59.410  1.00  0.00          N
ATOM    106  CA  GLY   35      -19.822  65.179  58.744  1.00  0.00          C
ATOM    107  C   GLY   35      -19.128  66.368  58.095  1.00  0.00          C
ATOM    108  O   GLY   35      -18.314  67.037  58.724  1.00  0.00          O
ATOM    109  N   GLU   36      -19.425  66.621  56.829  1.00  0.00          N
ATOM    110  CA  GLU   36      -18.804  67.748  56.156  1.00  0.00          C
ATOM    111  C   GLU   36      -17.608  67.421  55.274  1.00  0.00          C
ATOM    112  O   GLU   36      -17.267  68.207  54.383  1.00  0.00          O
ATOM    113  N   SER   37      -16.948  66.291  55.523  1.00  0.00          N
ATOM    114  CA  SER   37      -15.807  65.896  54.703  1.00  0.00          C
ATOM    115  C   SER   37      -16.305  65.530  53.302  1.00  0.00          C
ATOM    116  O   SER   37      -17.396  64.985  53.145  1.00  0.00          O
ATOM    117  N   GLY   38      -15.528  65.876  52.283  1.00  0.00          N
ATOM    118  CA  GLY   38      -15.889  65.580  50.901  1.00  0.00          C
ATOM    119  C   GLY   38      -15.944  64.071  50.683  1.00  0.00          C
ATOM    120  O   GLY   38      -15.120  63.336  51.228  1.00  0.00          O
ATOM    121  N   ALA   39      -16.925  63.612  49.913  1.00  0.00          N
ATOM    122  CA  ALA   39      -17.036  62.193  49.646  1.00  0.00          C
ATOM    123  C   ALA   39      -17.605  61.348  50.771  1.00  0.00          C
ATOM    124  O   ALA   39      -17.621  60.126  50.662  1.00  0.00          O
ATOM    125  N   GLY   40      -18.026  61.970  51.867  1.00  0.00          N
ATOM    126  CA  GLY   40      -18.629  61.228  52.979  1.00  0.00          C
ATOM    127  C   GLY   40      -20.132  61.540  52.969  1.00  0.00          C
ATOM    128  O   GLY   40      -20.523  62.712  52.979  1.00  0.00          O
ATOM    129  N   LEU   41      -20.996  60.508  52.879  1.00  0.00          N
ATOM    130  CA  LEU   41      -22.441  60.786  52.872  1.00  0.00          C
ATOM    131  C   LEU   41      -22.968  61.355  54.198  1.00  0.00          C
ATOM    132  O   LEU   41      -22.382  61.142  55.265  1.00  0.00          O
ATOM    133  N   VAL   42      -24.055  62.114  54.114  1.00  0.00          N
ATOM    134  CA  VAL   42      -24.662  62.687  55.304  1.00  0.00          C
ATOM    135  C   VAL   42      -25.504  61.639  55.983  1.00  0.00          C
ATOM    136  O   VAL   42      -26.106  60.797  55.318  1.00  0.00          O
ATOM    137  N   LYS   43      -25.515  61.687  57.309  1.00  0.00          N
ATOM    138  CA  LYS   43      -26.307  60.777  58.108  1.00  0.00          C
ATOM    139  C   LYS   43      -27.533  61.584  58.577  1.00  0.00          C
ATOM    140  O   LYS   43      -27.438  62.785  58.847  1.00  0.00          O
ATOM    141  N   ILE   44      -28.694  60.941  58.602  1.00  0.00          N
ATOM    142  CA  ILE   44      -29.925  61.614  58.977  1.00  0.00          C
ATOM    143  C   ILE   44      -30.601  61.067  60.200  1.00  0.00          C
ATOM    144  O   ILE   44      -31.141  61.822  60.997  1.00  0.00          O
ATOM    145  N   THR   45      -30.580  59.754  60.355  1.00  0.00          N
ATOM    146  CA  THR   45      -31.257  59.154  61.485  1.00  0.00          C
ATOM    147  C   THR   45      -30.670  57.819  61.910  1.00  0.00          C
ATOM    148  O   THR   45      -30.141  57.067  61.088  1.00  0.00          O
ATOM    149  N   ILE   46      -30.720  57.574  63.212  1.00  0.00          N
ATOM    150  CA  ILE   46      -30.283  56.322  63.795  1.00  0.00          C
ATOM    151  C   ILE   46      -31.306  55.985  64.873  1.00  0.00          C
ATOM    152  O   ILE   46      -31.725  56.865  65.633  1.00  0.00          O
ATOM    153  N   ASN   47      -31.727  54.727  64.926  1.00  0.00          N
ATOM    154  CA  ASN   47      -32.700  54.327  65.923  1.00  0.00          C
ATOM    155  C   ASN   47      -33.034  52.855  65.846  1.00  0.00          C
ATOM    156  O   ASN   47      -32.525  52.146  64.985  1.00  0.00          O
ATOM    157  N   GLY   48      -33.876  52.388  66.758  1.00  0.00          N
ATOM    158  CA  GLY   48      -34.266  50.990  66.775  1.00  0.00          C
ATOM    159  C   GLY   48      -35.673  50.820  66.241  1.00  0.00          C
ATOM    160  O   GLY   48      -36.560  51.624  66.520  1.00  0.00          O
ATOM    161  N   ALA   49      -35.839  49.816  65.398  1.00  0.00          N
ATOM    162  CA  ALA   49      -37.120  49.488  64.809  1.00  0.00          C
ATOM    163  C   ALA   49      -37.348  48.019  65.130  1.00  0.00          C
ATOM    164  O   ALA   49      -36.948  47.129  64.366  1.00  0.00          O
ATOM    165  N   HIS   50      -37.903  47.773  66.313  1.00  0.00          N
ATOM    166  CA  HIS   50      -38.172  46.414  66.744  1.00  0.00          C
ATOM    167  C   HIS   50      -36.901  45.660  67.075  1.00  0.00          C
ATOM    168  O   HIS   50      -36.236  45.966  68.061  1.00  0.00          O
ATOM    169  N   ASN   51      -36.550  44.693  66.233  1.00  0.00          N
ATOM    170  CA  ASN   51      -35.352  43.890  66.443  1.00  0.00          C
ATOM    171  C   ASN   51      -34.194  44.347  65.562  1.00  0.00          C
ATOM    172  O   ASN   51      -33.220  43.621  65.361  1.00  0.00          O
ATOM    173  N   CYS   52      -34.302  45.552  65.025  1.00  0.00          N
ATOM    174  CA  CYS   52      -33.261  46.083  64.165  1.00  0.00          C
ATOM    175  C   CYS   52      -32.858  47.479  64.582  1.00  0.00          C
ATOM    176  O   CYS   52      -33.590  48.161  65.295  1.00  0.00          O
ATOM    177  N   ARG   53      -31.678  47.887  64.135  1.00  0.00          N
ATOM    178  CA  ARG   53      -31.180  49.230  64.362  1.00  0.00          C
ATOM    179  C   ARG   53      -31.161  49.752  62.932  1.00  0.00          C
ATOM    180  O   ARG   53      -30.826  49.001  62.010  1.00  0.00          O
ATOM    181  N   ARG   54      -31.615  50.985  62.730  1.00  0.00          N
ATOM    182  CA  ARG   54      -31.626  51.585  61.407  1.00  0.00          C
ATOM    183  C   ARG   54      -30.717  52.810  61.370  1.00  0.00          C
ATOM    184  O   ARG   54      -30.514  53.483  62.391  1.00  0.00          O
ATOM    185  N   ILE   55      -30.137  53.042  60.195  1.00  0.00          N
ATOM    186  CA  ILE   55      -29.262  54.169  59.932  1.00  0.00          C
ATOM    187  C   ILE   55      -29.715  54.705  58.581  1.00  0.00          C
ATOM    188  O   ILE   55      -29.774  53.955  57.603  1.00  0.00          O
ATOM    189  N   ASP   56      -30.094  55.979  58.546  1.00  0.00          N
ATOM    190  CA  ASP   56      -30.549  56.613  57.317  1.00  0.00          C
ATOM    191  C   ASP   56      -29.438  57.542  56.864  1.00  0.00          C
ATOM    192  O   ASP   56      -28.986  58.390  57.631  1.00  0.00          O
ATOM    193  N   ILE   57      -28.991  57.368  55.629  1.00  0.00          N
ATOM    194  CA  ILE   57      -27.914  58.173  55.072  1.00  0.00          C
ATOM    195  C   ILE   57      -28.293  58.493  53.643  1.00  0.00          C
ATOM    196  O   ILE   57      -29.331  58.044  53.160  1.00  0.00          O
ATOM    197  N   ASP   58      -27.466  59.273  52.960  1.00  0.00          N
ATOM    198  CA  ASP   58      -27.754  59.615  51.575  1.00  0.00          C
ATOM    199  C   ASP   58      -27.758  58.413  50.657  1.00  0.00          C
ATOM    200  O   ASP   58      -27.001  57.460  50.858  1.00  0.00          O
ATOM    201  N   PRO   59      -28.606  58.477  49.639  1.00  0.00          N
ATOM    202  CA  PRO   59      -28.693  57.416  48.657  1.00  0.00          C
ATOM    203  C   PRO   59      -27.590  57.674  47.644  1.00  0.00          C
ATOM    204  O   PRO   59      -27.508  58.764  47.084  1.00  0.00          O
ATOM    205  N   SER   60      -26.741  56.675  47.416  1.00  0.00          N
ATOM    206  CA  SER   60      -25.647  56.817  46.469  1.00  0.00          C
ATOM    207  C   SER   60      -25.817  55.873  45.295  1.00  0.00          C
ATOM    208  O   SER   60      -26.815  55.155  45.215  1.00  0.00          O
TER
END


