
PFRMAT TS 
TARGET T0091
AUTHOR 1395-2891-7461
REMARK
REMARK Ugo Bastolla, Jochen Farwer and Ernst-Walter Knapp
REMARK Freie Universitaet Berlin, Institute of Crystallography
REMARK
METHOD For all fragments of the given sequence with length
METHOD between 35 and 85 residues, decoy structures were generated by
METHOD threading using a set of 1015 proteins (Hobohm U, Sander C.
METHOD Enlarged representative set of protein structure.
METHOD Protein Sci 1994; 3: 522-524. List available at
METHOD ftp://ftp.embl-heidelberg.de/pub/databases/
METHOD protein_extras/pdb_select/recent.pdb_select).
METHOD For all fragments the decoy structure of lowest energy was determined
METHOD using a modification of the energy function described in
METHOD (Bastolla U, Vendruscolo M,
METHOD Knapp EW.
METHOD A statistical mechanical method to optimize energy functions for
METHOD protein folding.
METHOD Proc Natl Acad Sci USA 2000, 97: 3977-3981).
METHOD An alignment was chosen using the z score, the alpha value and
METHOD a secondary structure prediction made by NNSSP
METHOD (Salamov A.A., Solovyev V.V.
METHOD Prediction of protein secondary sturcture by combining
METHOD nearest-neighbor algorithms and multiple sequence alignments.
METHOD J.Mol.Biol.,1995, 247, 11-15.).
MODEL 2
PARENT 1lrv
ATOM      1  N   ASN   51     15.011  54.326  66.129  1.00  0.00          N
ATOM      2  CA  ASN   51     15.914  54.238  64.994  1.00  0.00          C
ATOM      3  C   ASN   51     16.530  55.615  64.627  1.00  0.00          C
ATOM      4  O   ASN   51     15.820  56.614  64.494  1.00  0.00          O
ATOM      5  N   CYS   52     17.848  55.647  64.449  1.00  0.00          N
ATOM      6  CA  CYS   52     18.561  56.874  64.114  1.00  0.00          C
ATOM      7  C   CYS   52     18.010  57.567  62.871  1.00  0.00          C
ATOM      8  O   CYS   52     18.088  58.803  62.740  1.00  0.00          O
ATOM      9  N   ARG   53     17.495  56.732  61.960  1.00  0.00          N
ATOM     10  CA  ARG   53     16.956  57.113  60.656  1.00  0.00          C
ATOM     11  C   ARG   53     15.510  57.547  60.606  1.00  0.00          C
ATOM     12  O   ARG   53     14.589  56.727  60.777  1.00  0.00          O
ATOM     13  N   ARG   54     15.308  58.781  60.162  1.00  0.00          N
ATOM     14  CA  ARG   54     13.972  59.331  60.104  1.00  0.00          C
ATOM     15  C   ARG   54     12.923  58.505  59.345  1.00  0.00          C
ATOM     16  O   ARG   54     11.744  58.537  59.680  1.00  0.00          O
ATOM     17  N   ILE   55     13.324  57.838  58.259  1.00  0.00          N
ATOM     18  CA  ILE   55     12.359  57.057  57.473  1.00  0.00          C
ATOM     19  C   ILE   55     11.796  55.856  58.217  1.00  0.00          C
ATOM     20  O   ILE   55     10.585  55.589  58.152  1.00  0.00          O
ATOM     21  N   ASP   56     12.672  55.173  58.960  1.00  0.00          N
ATOM     22  CA  ASP   56     12.299  54.003  59.737  1.00  0.00          C
ATOM     23  C   ASP   56     11.304  54.482  60.775  1.00  0.00          C
ATOM     24  O   ASP   56     10.209  53.900  60.938  1.00  0.00          O
ATOM     25  N   ILE   57     11.619  55.630  61.374  1.00  0.00          N
ATOM     26  CA  ILE   57     10.746  56.185  62.397  1.00  0.00          C
ATOM     27  C   ILE   57      9.398  56.504  61.828  1.00  0.00          C
ATOM     28  O   ILE   57      8.357  56.194  62.440  1.00  0.00          O
ATOM     29  N   ASP   58      9.421  57.094  60.632  1.00  0.00          N
ATOM     30  CA  ASP   58      8.194  57.449  59.903  1.00  0.00          C
ATOM     31  C   ASP   58      7.378  56.186  59.637  1.00  0.00          C
ATOM     32  O   ASP   58      6.150  56.194  59.741  1.00  0.00          O
ATOM     33  N   PRO   59      8.053  55.079  59.348  1.00  0.00          N
ATOM     34  CA  PRO   59      7.326  53.828  59.108  1.00  0.00          C
ATOM     35  C   PRO   59      6.624  53.385  60.390  1.00  0.00          C
ATOM     36  O   PRO   59      5.438  53.002  60.366  1.00  0.00          O
ATOM     37  N   SER   60      7.334  53.525  61.516  1.00  0.00          N
ATOM     38  CA  SER   60      6.792  53.164  62.834  1.00  0.00          C
ATOM     39  C   SER   60      5.575  54.039  63.156  1.00  0.00          C
ATOM     40  O   SER   60      4.457  53.549  63.344  1.00  0.00          O
ATOM     41  N   LEU   61      5.782  55.342  63.160  1.00  0.00          N
ATOM     42  CA  LEU   61      4.705  56.275  63.437  1.00  0.00          C
ATOM     43  C   LEU   61      3.463  56.056  62.578  1.00  0.00          C
ATOM     44  O   LEU   61      2.340  56.388  62.952  1.00  0.00          O
ATOM     45  N   MET   62      3.671  55.526  61.391  1.00  0.00          N
ATOM     46  CA  MET   62      2.576  55.291  60.473  1.00  0.00          C
ATOM     47  C   MET   62      1.721  54.135  60.956  1.00  0.00          C
ATOM     48  O   MET   62      0.513  54.125  60.755  1.00  0.00          O
ATOM     49  N   GLU   63      2.350  53.189  61.644  1.00  0.00          N
ATOM     50  CA  GLU   63      1.675  51.962  62.076  1.00  0.00          C
ATOM     51  C   GLU   63      1.162  51.779  63.513  1.00  0.00          C
ATOM     52  O   GLU   63      0.087  51.214  63.706  1.00  0.00          O
ATOM     53  N   ASP   64      1.967  52.125  64.518  1.00  0.00          N
ATOM     54  CA  ASP   64      1.532  51.974  65.906  1.00  0.00          C
ATOM     55  C   ASP   64      0.226  52.747  66.104  1.00  0.00          C
ATOM     56  O   ASP   64     -0.061  53.697  65.364  1.00  0.00          O
ATOM     57  N   ASP   65     -0.596  52.329  67.086  1.00  0.00          N
ATOM     58  CA  ASP   65     -1.896  52.964  67.404  1.00  0.00          C
ATOM     59  C   ASP   65     -1.736  54.459  67.775  1.00  0.00          C
ATOM     60  O   ASP   65     -0.724  54.855  68.354  1.00  0.00          O
ATOM     61  N   LYS   66     -2.775  55.277  67.555  1.00  0.00          N
ATOM     62  CA  LYS   66     -2.727  56.722  67.844  1.00  0.00          C
ATOM     63  C   LYS   66     -2.289  57.138  69.257  1.00  0.00          C
ATOM     64  O   LYS   66     -1.580  58.139  69.446  1.00  0.00          O
ATOM     65  N   GLU   67     -2.703  56.356  70.246  1.00  0.00          N
ATOM     66  CA  GLU   67     -2.344  56.655  71.616  1.00  0.00          C
ATOM     67  C   GLU   67     -0.869  56.526  71.943  1.00  0.00          C
ATOM     68  O   GLU   67     -0.431  57.084  72.940  1.00  0.00          O
ATOM     69  N   MET   68     -0.099  55.809  71.138  1.00  0.00          N
ATOM     70  CA  MET   68      1.329  55.673  71.423  1.00  0.00          C
ATOM     71  C   MET   68      2.160  56.761  70.721  1.00  0.00          C
ATOM     72  O   MET   68      3.382  56.840  70.886  1.00  0.00          O
ATOM     73  N   LEU   69      1.477  57.650  70.008  1.00  0.00          N
ATOM     74  CA  LEU   69      2.126  58.706  69.237  1.00  0.00          C
ATOM     75  C   LEU   69      2.713  59.872  69.971  1.00  0.00          C
ATOM     76  O   LEU   69      3.546  60.572  69.404  1.00  0.00          O
ATOM     77  N   GLU   70      2.276  60.104  71.212  1.00  0.00          N
ATOM     78  CA  GLU   70      2.758  61.236  72.033  1.00  0.00          C
ATOM     79  C   GLU   70      4.234  61.226  72.318  1.00  0.00          C
ATOM     80  O   GLU   70      4.823  62.267  72.522  1.00  0.00          O
ATOM     81  N   ASP   71      4.831  60.050  72.348  1.00  0.00          N
ATOM     82  CA  ASP   71      6.255  59.952  72.592  1.00  0.00          C
ATOM     83  C   ASP   71      7.000  60.421  71.347  1.00  0.00          C
ATOM     84  O   ASP   71      8.218  60.578  71.392  1.00  0.00          O
ATOM     85  N   LEU   72      6.278  60.644  70.236  1.00  0.00          N
ATOM     86  CA  LEU   72      6.897  61.061  68.957  1.00  0.00          C
ATOM     87  C   LEU   72      6.649  62.514  68.591  1.00  0.00          C
ATOM     88  O   LEU   72      7.306  63.065  67.702  1.00  0.00          O
ATOM     89  N   ILE   73      5.725  63.119  69.333  1.00  0.00          N
ATOM     90  CA  ILE   73      5.262  64.505  69.188  1.00  0.00          C
ATOM     91  C   ILE   73      6.340  65.546  68.992  1.00  0.00          C
ATOM     92  O   ILE   73      6.079  66.574  68.372  1.00  0.00          O
ATOM     93  N   ALA   74      7.518  65.324  69.574  1.00  0.00          N
ATOM     94  CA  ALA   74      8.605  66.286  69.454  1.00  0.00          C
ATOM     95  C   ALA   74      9.780  65.667  68.732  1.00  0.00          C
ATOM     96  O   ALA   74     10.933  66.033  68.992  1.00  0.00          O
ATOM     97  N   ALA   75      9.516  64.737  67.819  1.00  0.00          N
ATOM     98  CA  ALA   75     10.616  64.099  67.108  1.00  0.00          C
ATOM     99  C   ALA   75     11.513  65.171  66.453  1.00  0.00          C
ATOM    100  O   ALA   75     11.010  66.225  66.043  1.00  0.00          O
ATOM    101  N   ALA   76     12.823  64.950  66.338  1.00  0.00          N
ATOM    102  CA  ALA   76     13.634  66.011  65.712  1.00  0.00          C
ATOM    103  C   ALA   76     13.505  66.135  64.189  1.00  0.00          C
ATOM    104  O   ALA   76     14.150  66.970  63.580  1.00  0.00          O
ATOM    105  N   PHE   77     12.623  65.351  63.582  1.00  0.00          N
ATOM    106  CA  PHE   77     12.458  65.390  62.151  1.00  0.00          C
ATOM    107  C   PHE   77     11.095  65.845  61.714  1.00  0.00          C
ATOM    108  O   PHE   77     10.089  65.276  62.137  1.00  0.00          O
ATOM    109  N   ASN   78     11.052  66.748  60.734  1.00  0.00          N
ATOM    110  CA  ASN   78      9.752  67.241  60.283  1.00  0.00          C
ATOM    111  C   ASN   78      8.878  66.249  59.549  1.00  0.00          C
ATOM    112  O   ASN   78      7.650  66.320  59.653  1.00  0.00          O
ATOM    113  N   ASP   79      9.489  65.281  58.869  1.00  0.00          N
ATOM    114  CA  ASP   79      8.690  64.318  58.139  1.00  0.00          C
ATOM    115  C   ASP   79      8.004  63.428  59.148  1.00  0.00          C
ATOM    116  O   ASP   79      6.794  63.206  59.039  1.00  0.00          O
ATOM    117  N   ALA   80      8.710  62.960  60.181  1.00  0.00          N
ATOM    118  CA  ALA   80      7.961  62.126  61.139  1.00  0.00          C
ATOM    119  C   ALA   80      6.912  62.966  61.919  1.00  0.00          C
ATOM    120  O   ALA   80      5.766  62.526  62.137  1.00  0.00          O
ATOM    121  N   VAL   81      7.237  64.217  62.226  1.00  0.00          N
ATOM    122  CA  VAL   81      6.249  65.032  62.948  1.00  0.00          C
ATOM    123  C   VAL   81      5.008  65.354  62.149  1.00  0.00          C
ATOM    124  O   VAL   81      3.935  65.517  62.722  1.00  0.00          O
ATOM    125  N   ARG   82      5.151  65.448  60.828  1.00  0.00          N
ATOM    126  CA  ARG   82      4.001  65.716  59.962  1.00  0.00          C
ATOM    127  C   ARG   82      3.079  64.516  60.069  1.00  0.00          C
ATOM    128  O   ARG   82      1.878  64.662  60.212  1.00  0.00          O
ATOM    129  N   ARG   83      3.663  63.324  60.066  1.00  0.00          N
ATOM    130  CA  ARG   83      2.895  62.104  60.169  1.00  0.00          C
ATOM    131  C   ARG   83      2.211  62.033  61.512  1.00  0.00          C
ATOM    132  O   ARG   83      1.048  61.629  61.588  1.00  0.00          O
ATOM    133  N   ALA   84      2.909  62.456  62.572  1.00  0.00          N
ATOM    134  CA  ALA   84      2.314  62.434  63.898  1.00  0.00          C
ATOM    135  C   ALA   84      1.083  63.346  63.917  1.00  0.00          C
ATOM    136  O   ALA   84     -0.007  62.932  64.322  1.00  0.00          O
ATOM    137  N   GLU   85      1.252  64.566  63.421  1.00  0.00          N
ATOM    138  CA  GLU   85      0.173  65.546  63.358  1.00  0.00          C
ATOM    139  C   GLU   85     -1.046  65.015  62.631  1.00  0.00          C
ATOM    140  O   GLU   85     -2.165  65.438  62.894  1.00  0.00          O
ATOM    141  N   GLU   86     -0.815  64.085  61.711  1.00  0.00          N
ATOM    142  CA  GLU   86     -1.881  63.515  60.908  1.00  0.00          C
ATOM    143  C   GLU   86     -2.700  62.538  61.676  1.00  0.00          C
ATOM    144  O   GLU   86     -3.906  62.530  61.560  1.00  0.00          O
ATOM    145  N   LEU   87     -2.027  61.682  62.433  1.00  0.00          N
ATOM    146  CA  LEU   87     -2.707  60.629  63.194  1.00  0.00          C
ATOM    147  C   LEU   87     -2.990  60.864  64.694  1.00  0.00          C
ATOM    148  O   LEU   87     -3.672  60.039  65.316  1.00  0.00          O
ATOM    149  N   GLN   88     -2.411  61.911  65.293  1.00  0.00          N
ATOM    150  CA  GLN   88     -2.628  62.195  66.712  1.00  0.00          C
ATOM    151  C   GLN   88     -4.121  62.332  66.930  1.00  0.00          C
ATOM    152  O   GLN   88     -4.831  62.833  66.067  1.00  0.00          O
ATOM    153  N   LYS   89     -4.628  61.864  68.084  1.00  0.00          N
ATOM    154  CA  LYS   89     -6.078  61.982  68.290  1.00  0.00          C
ATOM    155  C   LYS   89     -6.540  63.412  68.329  1.00  0.00          C
ATOM    156  O   LYS   89     -5.912  64.263  68.944  1.00  0.00          O
ATOM    157  N   GLU   90     -7.625  63.657  67.614  1.00  0.00          N
ATOM    158  CA  GLU   90     -8.237  64.961  67.478  1.00  0.00          C
ATOM    159  C   GLU   90     -8.175  65.789  68.770  1.00  0.00          C
ATOM    160  O   GLU   90     -7.567  66.860  68.777  1.00  0.00          O
ATOM    161  N   LYS   91     -8.673  65.224  69.879  1.00  0.00          N
ATOM    162  CA  LYS   91     -8.721  65.910  71.182  1.00  0.00          C
ATOM    163  C   LYS   91     -7.403  66.412  71.716  1.00  0.00          C
ATOM    164  O   LYS   91     -7.386  67.413  72.422  1.00  0.00          O
ATOM    165  N   MET   92     -6.311  65.712  71.419  1.00  0.00          N
ATOM    166  CA  MET   92     -5.002  66.121  71.921  1.00  0.00          C
ATOM    167  C   MET   92     -4.191  66.959  70.955  1.00  0.00          C
ATOM    168  O   MET   92     -3.105  67.433  71.320  1.00  0.00          O
ATOM    169  N   ALA   93     -4.739  67.201  69.760  1.00  0.00          N
ATOM    170  CA  ALA   93     -4.028  67.943  68.705  1.00  0.00          C
ATOM    171  C   ALA   93     -3.494  69.343  69.009  1.00  0.00          C
ATOM    172  O   ALA   93     -2.456  69.748  68.435  1.00  0.00          O
ATOM    173  N   SER   94     -4.202  70.081  69.878  1.00  0.00          N
ATOM    174  CA  SER   94     -3.795  71.428  70.256  1.00  0.00          C
ATOM    175  C   SER   94     -2.405  71.421  70.863  1.00  0.00          C
ATOM    176  O   SER   94     -1.742  72.434  71.018  1.00  0.00          O
ATOM    177  N   VAL   95     -1.957  70.237  71.219  1.00  0.00          N
ATOM    178  CA  VAL   95     -0.648  70.065  71.787  1.00  0.00          C
ATOM    179  C   VAL   95      0.379  70.374  70.725  1.00  0.00          C
ATOM    180  O   VAL   95      1.534  70.656  71.050  1.00  0.00          O
ATOM    181  N   THR   96     -0.031  70.298  69.448  1.00  0.00          N
ATOM    182  CA  THR   96      0.880  70.551  68.315  1.00  0.00          C
ATOM    183  C   THR   96      0.822  71.917  67.642  1.00  0.00          C
ATOM    184  O   THR   96      1.705  72.257  66.847  1.00  0.00          O
ATOM    185  N   ALA   97     -0.164  72.723  68.020  1.00  0.00          N
ATOM    186  CA  ALA   97     -0.345  74.054  67.445  1.00  0.00          C
ATOM    187  C   ALA   97      0.829  75.024  67.516  1.00  0.00          C
ATOM    188  O   ALA   97      0.764  76.087  66.931  1.00  0.00          O
ATOM    189  N   GLY   98      1.895  74.709  68.228  1.00  0.00          N
ATOM    190  CA  GLY   98      2.984  75.653  68.213  1.00  0.00          C
ATOM    191  C   GLY   98      4.206  75.020  67.652  1.00  0.00          C
ATOM    192  O   GLY   98      5.322  75.471  67.926  1.00  0.00          O
ATOM    193  N   MET   99      4.016  73.933  66.911  1.00  0.00          N
ATOM    194  CA  MET   99      5.149  73.260  66.295  1.00  0.00          C
ATOM    195  C   MET   99      5.803  74.313  65.413  1.00  0.00          C
ATOM    196  O   MET   99      5.136  74.996  64.640  1.00  0.00          O
ATOM    197  N   PRO  100      7.108  74.469  65.525  1.00  0.00          N
ATOM    198  CA  PRO  100      7.895  75.436  64.754  1.00  0.00          C
ATOM    199  C   PRO  100      7.799  75.333  63.224  1.00  0.00          C
ATOM    200  O   PRO  100      8.037  76.288  62.489  1.00  0.00          O
TER
END


