
PFRMAT AL
TARGET T0093
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 2
PARENT 1coz_A
M    1 M 1
L    2 K 2
D    3 K 3
I    4 V 4
V    5 I 5
L    6 T 6
Y    7 Y 7
E    8 G 8
P    9 T 9
E   10 F 10
I   11 D 11
P   12 L 12
Q   13 L 13
N   14 H 14
T   15 W 15
G   16 G 16
N   17 H 17
I   18 I 18
I   19 L 21
R   20 E 22
L   21 R 23
C   22 A 24
A   23 K 25
N   24 Q 26
T   25 L 27
G   26 G 28
F   27 D 29
R   28 Y 30
L   29 L 31
H   30 V 32
L   31 V 33
I   32 I 35
E   33 S 36
P   34 T 37
L   35 D 38
G   36 E 39
F   37 F 40
T   38 A 48
W   39 Y 49
D   40 H 50
D   41 S 51
K   42 Y 52
R   43 E 53
L   44 H 54
R   45 R 55
R   46 K 56
S   47 L 57
G   48 I 58
L   49 L 59
D   50 E 60
Y   51 T 61
H   52 I 62
E   53 R 63
F   54 Y 64
A   55 V 65
E   56 E 67
I   57 V 68
K   58 I 69
R   59 P 70
H   60 E 71
K   61 K 72
T   62 N 73
F   63 W 74
E   64 E 75
A   65 D 80
F   66 I 81
L   67 I 82
E   68 D 83
S   69 H 84
E   70 N 85
K   73 I 86
R   74 D 87
L   75 V 88
F   76 F 89
A   77 V 90
L   78 M 91
T   79 G 92
T   80 D 93
K   81 D 94
G   82 W 95
C   83 E 96
P   84 G 97
A   85 K 98
H   86 F 99
S   87 D 100
Q   88 F 101
V   89 L 102
K   90 K 103
F   91 D 104
K   92 Q 105
L   93 C 106
G   94 E 107
D   95 V 108
Y   96 V 109
L   97 Y 110
M   98 L 111
P  101 P 112
E  102 R 113
T  103 T 114
R  104 E 115
G  105 G 116
I  106 I 117
P  107 S 118
M  108 T 119
S  109 T 120
I  110 K 121
L  111 I 122
N  112 K 123
E  113 E 124
M  114 E 125
P  115 I 126
TER
END

