

PFRMAT AL
TARGET T0093
AUTHOR 9885-9936-6780
METHOD Smith-Waterman alignment of
METHOD secondary structure annotated
METHOD sequence.
MODEL 4
PARENT 1pii
M    1   I  277
L    2   Y  278
D    3   G  279
I    4   G  280
V    5   L  281
L    6   I  282
Y    7   F  283
E    8   V  284
P    9   A  285
E   10   T  286
I   11   S  287
P   12   P  288
Q   13   V  291
N   14   N  292
T   15   V  293
G   16   E  294
N   17   Q  295
I   18   A  296
I   19   Q  297
R   20   E  298
L   21   V  299
C   22   M  300
A   23   A  301
N   24   A  302
T   25   A  303
G   26   P  304
F   27   L  305
R   28   Q  306
L   29   Y  307
H   30   V  308
L   31   G  309
I   32   V  310
E   33   F  311
L   35   R  312
G   36   N  313
D   40   H  314
D   41   D  315
K   42   V  319
R   43   V  320
L   44   D  321
R   45   K  322
R   46   A  323
S   47   K  324
G   48   V  325
L   49   L  326
D   50   S  327
H   52   L  328
E   53   A  329
F   54   A  330
A   55   V  331
E   56   Q  332
I   57   L  333
R   59   N  336
H   60   E  337
K   61   E  338
T   62   Q  339
F   63   Y  341
E   64   I  342
A   65   D  343
F   66   T  344
L   67   L  345
E   68   R  346
S   69   E  347
E   70   A  348
K   71   L  349
P   72   P  350
K   73   A  351
R   74   H  352
L   75   I  355
F   76   W  356
A   77   A  358
L   78   L  359
T   79   S  360
T   80   V  361
G   82   G  362
C   83   L  365
P   84   P  366
A   85   A  367
H   86   R  368
K   90   E  369
F   91   F  370
K   92   Q  371
L   93   H  372
G   94   V  373
D   95   D  374
Y   96   Y  376
L   97   V  377
M   98   L  378
F   99   D  379
G  100   G  381
P  101   Q  382
E  102   G  383
T  103   G  384
R  104   S  385
G  105   G  386
I  106   F  389
P  107   D  390
M  108   W  391
S  109   S  392
I  110   L  393
L  111   L  394
N  112   N  395
E  113   G  396
M  114   Q  397
P  115   S  398
M  116   L  399
E  117   G  400
Q  118   N  401
I  120   V  402
R  121   L  403
I  122   L  404
P  123   A  405
M  124   G  406
T  125   G  407
A  126   L  408
N  127   G  409
S  128   A  410
M  131   D  411
N  132   N  412
L  133   C  413
S  134   V  414
N  135   E  415
S  136   A  416
V  137   A  417
TER
END
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Ajay K. Royyuru, PhD                   Phone: (914) 945-1335
Research Staff Member                    Fax: (914) 945-4104
Computational Biology Center          mailto:ajayr@us.ibm.com
IBM Research                                 --- IBM Internal ---
T. J. Watson Research Center           Phone: T/L 862-1335
P.O. Box 218, Route 134                  Fax: T/L 862-4104
Yorktown Heights, NY 10598            Office: 13-106D



