
PFRMAT AL
TARGET T0094
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 3
PARENT 1a4p_A
D   16 P 1
E   17 S 2
E   18 Q 3
S   19 M 4
E   20 E 5
P   21 H 6
R   22 A 7
F   23 M 8
K   24 E 9
K   25 T 10
L   26 M 11
M   27 M 12
E   28 F 13
A   29 T 14
L   30 F 15
R   31 H 16
S   32 K 17
E   33 F 18
F   34 A 19
T   35 G 20
G   36 D 21
P   37 K 22
R   38 G 23
F   39 Y 24
V   40 L 25
T   52 T 26
A   53 K 27
D   54 E 28
E   55 D 29
A   56 L 30
K   57 R 31
K   58 V 32
M   59 L 33
F   60 M 34
E   61 E 35
S   62 K 36
A   63 E 37
F   84 F 38
Q   85 P 39
V   87 G 40
F   88 F 41
L   89 L 42
L   90 E 43
L   91 N 44
Q   92 Q 45
T   93 K 46
T   94 D 47
P   95 P 48
E   96 L 49
V   97 A 50
M   98 V 51
E   99 D 52
E  102 K 53
H  103 I 54
C  104 M 55
K  105 K 56
N  106 D 57
H  107 L 58
F  108 D 59
N  109 Q 60
C  110 C 61
S  111 R 62
T  112 D 63
T  113 G 64
T  114 K 65
P  115 V 66
Y  116 G 67
M  117 F 68
P  118 Q 69
H  119 S 70
L  120 F 71
S  121 F 72
L  122 S 73
L  123 L 74
Y  124 I 75
A  125 A 76
E  126 G 77
L  127 L 78
T  128 T 79
E  129 N 83
E  130 D 84
E  131 Y 85
K  132 F 86
K  133 V 87
N  134 V 88
A  135 H 89
Q  136 M 90
E  137 K 91
K  138 Q 92
TER
END

