
PFRMAT AL
TARGET T0094
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 4
PARENT 1urn_A
M    1 A 2
E    2 V 3
E    3 P 4
V    4 E 5
K    5 T 6
K    6 R 7
D    7 P 8
V    8 N 9
Y    9 H 10
S   10 T 11
V   11 I 12
W   12 Y 13
A   13 N 16
L   14 L 17
P   15 N 18
D   16 E 19
E   17 K 20
E   18 I 21
S   19 K 22
E   20 K 23
P   21 D 24
R   22 E 25
F   23 L 26
K   24 K 27
K   25 K 28
L   26 S 29
M   27 L 30
E   28 H 31
A   29 A 32
L   30 I 33
R   31 F 34
S   32 S 35
E   33 R 36
F   34 F 37
T   35 G 38
G   36 Q 39
P   37 S 46
R   38 R 47
F   39 S 48
V   40 L 49
P   41 K 50
H   42 M 51
V   43 R 52
T   44 G 53
V   45 Q 54
A   46 A 55
V   47 F 56
S   48 V 57
A   49 I 58
Y   50 F 59
L   51 K 60
T   52 E 61
A   53 V 62
D   54 S 63
E   55 S 64
A   56 A 65
K   57 T 66
K   58 N 67
M   59 A 68
F   60 L 69
E   61 R 70
S   62 S 71
A   63 M 72
D   65 Q 73
G   66 G 74
L   67 F 75
K   68 P 76
A   69 F 77
Y   70 Y 78
T   71 P 81
A   72 M 82
T   73 R 83
V   74 I 84
D   75 Q 85
R   76 Y 86
V   77 A 87
S   78 K 88
T   79 T 89
G   80 D 90
T   81 S 91
F   82 D 92
F   83 I 93
F   84 I 94
Q   85 A 95
C   86 K 96
V   87 M 97
TER
END

