
PFRMAT SS
TARGET T0094
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0094.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 2.55215
METHOD
MODEL 1
M C 0.73
E H 0.70
E H 0.79
V H 0.78
K H 0.79
K H 0.74
D H 0.58
V H 0.46
Y E 0.49
S E 0.64
V E 0.71
W E 0.66
A C 0.48
L C 0.77
P C 0.92
D H 0.55
E H 0.67
E H 0.74
S H 0.75
E H 0.86
P H 0.94
R H 0.96
F H 0.98
K H 0.99
K H 0.99
L H 0.99
M H 0.97
E H 0.97
A H 0.94
L H 0.82
R H 0.81
S H 0.73
E H 0.63
F C 0.64
T C 0.76
G C 0.91
P C 0.84
R C 0.70
F C 0.58
V C 0.71
P C 0.82
H C 0.78
V E 0.55
T E 0.73
V E 0.79
A E 0.67
V E 0.54
S C 0.57
A C 0.53
Y E 0.46
L C 0.53
T C 0.70
A H 0.91
D H 0.96
E H 0.98
A H 0.97
K H 0.99
K H 0.99
M H 0.99
F H 0.98
E H 0.98
S H 0.95
A H 0.87
C H 0.62
D C 0.56
G C 0.82
L C 0.72
K C 0.54
A E 0.54
Y E 0.56
T E 0.57
A E 0.68
T E 0.70
V E 0.45
D C 0.37
R H 0.35
V E 0.40
S C 0.42
T C 0.57
G C 0.62
T C 0.41
F E 0.38
F E 0.57
F E 0.71
Q E 0.76
C E 0.84
V E 0.91
F E 0.92
L E 0.89
L E 0.90
L E 0.68
Q C 0.61
T C 0.68
T C 0.58
P H 0.55
E H 0.66
V H 0.74
M H 0.79
E H 0.80
A H 0.81
G H 0.79
E H 0.77
H H 0.70
C H 0.67
K H 0.66
N H 0.64
H H 0.46
F C 0.70
N C 0.76
C C 0.75
S C 0.76
T C 0.76
T C 0.76
T C 0.61
P C 0.48
Y C 0.45
M C 0.53
P C 0.55
H H 0.52
L H 0.59
S H 0.59
L H 0.56
L H 0.64
Y H 0.68
A H 0.48
E C 0.55
L C 0.67
T C 0.80
E H 0.92
E H 0.92
E H 0.93
K H 0.89
K H 0.90
N H 0.87
A H 0.84
Q H 0.81
E H 0.83
K H 0.77
A H 0.70
Y H 0.46
T C 0.38
L C 0.45
D C 0.67
S C 0.78
S C 0.85
L C 0.93
D C 0.90
G C 0.80
L C 0.69
S C 0.53
F E 0.50
R E 0.59
L E 0.63
N E 0.63
R E 0.63
L E 0.61
A E 0.70
L E 0.79
C E 0.68
K E 0.50
T C 0.74
D C 0.87
T C 0.91
E C 0.90
D C 0.75
K C 0.78
T C 0.74
L C 0.69
E C 0.72
T C 0.65
W C 0.43
E E 0.54
T E 0.63
V E 0.73
A E 0.82
V E 0.79
C E 0.71
N C 0.56
L C 0.77
N C 0.93
P C 0.98
END

