
PFRMAT AL
TARGET T0094
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=3.24 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: ndk
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and environment-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  5
PARENT 1ndl_A
M   1     A     2 
E   2     A     3 
E   3     N     4 
V   4     K     5 
K   5     E     6 
K   6     R     7 
D   7     T     8 
V   8     F     9 
Y   9     I    10 
S  10     M    11 
V  11     V    12 
L  14     K    13 
P  15     P    14 
D  16     D    15 
E  17     G    16 
E  18     V    17 
S  19     Q    18 
E  20     R    19 
P  21     G    20 
R  22     L    21 
F  23     V    22 
K  24     G    23 
K  25     K    24 
L  26     I    25 
M  27     I    26 
E  28     E    27 
A  29     R    28 
L  30     F    29 
R  31     E    30 
S  32     Q    31 
E  33     K    32 
V  40     G    33 
P  41     F    34 
H  42     K    35 
V  43     L    36 
T  44     V    37 
V  45     A    38 
A  46     L    39 
V  47     K    40 
S  48     F    41 
A  49     T    42 
Y  50     W    43 
L  51     A    44 
T  52     S    45 
A  53     K    46 
D  54     E    47 
E  55     L    48 
A  56     L    49 
K  57     E    50 
K  58     K    51 
M  59     H    52 
F  60     Y    53 
E  61     A    54 
S  62     D    55 
A  63     L    56 
D  65     S    57 
G  66     A    58 
L  67     R    59 
K  68     P    60 
A  69     F    61 
Y  70     F    62 
T  71     P    63 
A  72     G    64 
T  73     L    65 
V  74     V    66 
D  75     N    67 
R  76     Y    68 
V  77     M    69 
S  78     N    70 
T  79     S    71 
G  80     G    72 
T  81     P    73 
V  87     V    74 
F  88     V    75 
L  89     P    76 
L  90     M    77 
L  91     V    78 
Q  92     W    79 
T  93     E    80 
T  94     G    81 
P  95     L    82 
E  96     N    83 
V  97     V    84 
M  98     V    85 
E  99     K    86 
A 100     T    87 
G 101     G    88 
E 102     R    89 
H 103     Q    90 
C 104     M    91 
K 105     L    92 
N 106     G    93 
H 107     A    94 
F 108     T    95 
N 109     N    96 
C 110     P    97 
S 111     A    98 
T 112     D    99 
T 113     S   100 
T 114     L   101 
P 115     P   102 
S 121     G   103 
L 122     T   104 
L 123     I   105 
Y 124     R   106 
A 125     G   107 
E 126     D   108 
L 127     F   109 
T 128     C   110 
E 129     I   111 
E 130     Q   112 
E 131     V   113 
K 132     G   114 
K 133     R   115 
N 134     N   116 
A 135     I   117 
Q 136     I   118 
E 137     H   119 
K 138     G   120 
A 139     S   121 
Y 140     D   122 
T 141     A   123 
L 142     V   124 
D 143     E   125 
S 144     S   126 
S 145     A   127 
L 146     E   128 
D 147     K   129 
G 148     E   130 
L 149     I   131 
S 150     A   132 
F 151     L   133 
R 152     W   134 
L 153     F   135 
N 154     N   136 
D 165     E   137 
K 166     K   138 
T 167     E   139 
L 168     L   140 
E 169     V   141 
T 170     T   142 
W 171     W   143 
E 172     T   144 
T 173     P   145 
V 174     A   146 
A 175     A   147 
V 176     K   148 
C 177     D   149 
N 178     W   150 
L 179     I   151 
N 180     Y   152 
P 181     E   153 
TER
END

