
PFRMAT AL
TARGET T0094
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 2
PARENT 1rtp_1
A   13 S 1
L   14 M 2
P   15 T 3
D   16 D 4
E   17 L 5
E   18 L 6
S   19 S 7
E   20 A 8
P   21 E 9
R   22 D 10
F   23 I 11
K   24 K 12
K   25 K 13
L   26 A 14
M   27 I 15
E   28 G 16
A   29 A 17
F   34 F 18
T   35 T 19
G   36 A 20
P   37 A 21
R   38 D 22
F   39 S 23
V   40 F 24
P   41 D 25
H   42 H 26
V   43 F 30
T   44 Q 31
V   45 M 32
A   46 V 33
V   47 G 34
S   48 L 35
A   49 K 36
Y   50 K 37
L   51 K 38
T   52 S 39
A   53 A 40
D   54 D 41
E   55 D 42
A   56 V 43
K   57 K 44
K   58 K 45
M   59 V 46
F   60 F 47
E   61 H 48
S   62 I 49
A   63 L 50
C   64 D 51
D   65 K 52
G   66 D 53
D   75 K 54
R   76 S 55
V   77 G 56
S   78 F 57
T   79 I 58
G   80 E 59
T   81 E 60
F   82 D 61
F   83 E 62
F   84 L 63
Q   85 G 64
C   86 S 65
V   87 I 66
F   88 L 67
L   89 K 68
L   90 G 69
L   91 F 70
Q   92 S 71
T   93 S 72
T   94 D 73
P   95 A 74
E   96 R 75
V   97 A 79
M   98 K 80
E   99 E 81
A  100 T 82
G  101 K 83
E  102 T 84
H  103 L 85
C  104 M 86
K  105 A 87
N  106 A 88
H  107 G 89
F  108 D 90
N  109 K 91
C  110 D 92
S  111 G 93
T  112 D 94
T  113 G 95
T  114 K 96
P  115 I 97
Y  116 G 98
M  117 V 99
P  118 E 100
H  119 E 101
L  120 F 102
S  121 S 103
L  122 T 104
L  123 L 105
Y  124 V 106
A  125 A 107
E  126 E 108
L  127 S 109
TER
END

