
PFRMAT AL
TARGET T0094
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  1
PARENT 1ygh_A
F  83    F 171
F  84    A 172
Q  85    E 173
C  86    I 174
V  87    V 175
F  88    F 176
L  89    C 177
L  90    A 178
L  91    I 179
Q  92    S 180
T  93    S 181
T  94    T 182
P  95    E 183
E  96    Q 184
V  97    V 185
M  98    R 186
E  99    G 187
A 100    Y 188
G 101    G 189
E 102    A 190
H 103    H 191
C 104    L 192
K 105    M 193
N 106    N 194
H 107    H 195
F 108    L 196
N 109    K 197
C 110    D 198
S 111    Y 199
T 112    V 200
T 113    R 201
T 114    N 202
P 115    T 203
Y 116    S 204
M 117    N 205
P 118    I 206
H 119    K 207
L 120    Y 208
S 121    F 209
L 122    L 210
L 123    T 211
Y 124    Y 212
A 125    A 213
E 126    D 214
L 127    A 217
T 128    I 218
E 129    G 219
E 130    Y 220
E 131    F 221
K 132    K 222
K 133    K 223
N 134    Q 224
A 135    G 225
Q 136    F 226
E 137    T 227
K 138    K 228
A 139    E 229
Y 140    I 230
T 141    T 231
L 142    L 232
D 143    D 233
S 144    K 234
S 145    S 235
L 146    I 236
TER
END

