
PFRMAT SS
TARGET T0094
AUTHOR 6153-6797-7392
METHOD The nearest neighbour method based on the FFAS
METHOD profile-profile matching algorithm.
METHOD 
METHOD The FFAS sequence profile method is described in:
METHOD 
METHOD Rychlewski, L., Jaroszewski, L., Li, W. & Godzik, A. (2000). 
METHOD "Comparison of sequence profiles. Strategies for structural
METHOD predictions using sequence information". Protein Science 9, 232-241 
METHOD 
METHOD The prototype of the secondary structure prediction
METHOD method is described in:
METHOD Rychlewski, L., and Godzik. A, (1997) 
METHOD "Secondary structure prediction using segment similarity", 
METHOD Protein Eng 10, 1143-1153 
METHOD 
METHOD The detailed description of the method will be a subject
METHOD of the separate publication.
METHOD 
MODEL 1
M C 0.67
E H 0.56
E H 0.78
V H 0.78
K H 0.78
K H 0.78
D H 0.78
V H 0.78
Y H 0.67
S H 0.56
V E 0.67
W E 0.78
A C 0.89
L C 0.89
P C 1.00
D C 0.78
E C 0.67
E C 0.67
S H 0.78
E H 0.89
P H 0.89
R H 1.00
F H 1.00
K H 1.00
K H 1.00
L H 1.00
M H 1.00
E H 1.00
A H 1.00
L H 0.89
R H 0.78
S C 0.67
E C 0.67
F C 0.78
T C 1.00
G C 0.89
P C 0.89
R C 0.78
F C 0.78
V C 0.78
P C 0.78
H E 0.56
V E 0.78
T E 0.89
V E 0.89
A E 0.78
V E 0.67
S C 0.56
A C 0.67
Y C 0.56
L C 0.67
T C 0.78
A H 0.89
D H 0.89
E H 1.00
A H 1.00
K H 1.00
K H 1.00
M H 1.00
F H 0.89
E H 0.89
S H 0.89
A H 0.89
C H 0.78
D H 0.78
G C 0.78
L C 0.67
K C 0.56
A E 0.44
Y E 0.56
T E 0.67
A E 0.89
T E 0.89
V E 0.78
D C 0.78
R C 0.67
V C 0.67
S C 0.78
T C 0.78
G C 0.78
T C 0.67
F C 0.67
F E 0.67
F E 0.67
Q E 0.67
C E 0.56
V E 0.56
F E 0.67
L E 0.78
L E 0.78
L E 0.56
Q C 0.56
T C 0.89
T C 0.89
P H 0.78
E H 0.78
V H 0.78
M H 0.89
E H 0.78
A H 0.78
G C 0.89
E H 0.67
H H 0.67
C H 0.67
K H 0.78
N H 0.67
H C 0.56
F C 0.78
N C 0.78
C C 0.67
S C 0.67
T C 0.78
T C 0.78
T C 0.89
P C 0.78
Y E 0.67
M C 0.78
P C 0.78
H E 0.67
L C 0.67
S C 0.78
L E 0.67
L E 0.44
Y C 0.67
A C 0.89
E C 0.89
L C 1.00
T C 1.00
E H 0.89
E H 1.00
E H 1.00
K H 1.00
K H 1.00
N H 0.89
A H 1.00
Q H 1.00
E H 0.89
K H 1.00
A H 0.89
Y E 0.89
T E 0.89
L E 0.89
D E 0.78
S C 0.89
S C 1.00
L C 0.78
D C 0.56
G C 0.56
L E 0.67
S E 0.67
F E 0.67
R E 0.56
L E 0.67
N E 0.56
R H 0.56
L H 0.56
A E 0.56
L E 0.67
C E 0.67
K C 0.67
T C 0.67
D C 0.78
T C 0.67
E C 0.78
D C 0.67
K C 0.67
T C 0.56
L H 0.44
E H 0.56
T H 0.56
W H 0.67
E H 0.56
T H 0.56
V H 0.56
A H 0.44
V H 0.44
C C 0.44
N C 0.44
L C 0.56
N C 0.78
P C 0.78
END


