
PFRMAT SS
TARGET T0094
AUTHOR 9521-1365-5893
METHOD Program Name: PSIPRED
METHOD Synopsis: Neural network prediction based on PSIBLAST output
METHOD Five neural networks are used to predict secondary structure directly
METHOD from the profiles generated by PSIBLAST. Networks 1-4 predict
METHOD secondary structure, the 5th network filters the output of the first
METHOD level networks. The first level networks have 17*21 inputs and 75 hidden
METHOD units, the second level network has 17*3 inputs and 55 hidden units.
METHOD The networks have been trained on a set of 2937 proteins with
METHOD early-stopped training. 10% of the training data was used to detect
METHOD convergence.
METHOD The target sequence was scanned against a non-redundant databank of
METHOD filtered protein sequences (> 500,000 sequences), with 3 PSIBLAST
METHOD iterations.
MODEL  1
M C 0.99
E C 0.33
E H 0.22
V H 0.25
K H 0.20
K H 0.17
D H 0.15
V H 0.11
Y H 0.06
S E 0.01
V E 0.07
W E 0.12
A E 0.17
L C 0.76
P C 0.47
D C 0.26
E C 0.16
E C 0.13
S C 0.09
E H 0.08
P H 0.47
R H 0.70
F H 0.83
K H 0.90
K H 0.93
L H 0.94
M H 0.95
E H 0.93
A H 0.89
L H 0.61
R H 0.39
S H 0.25
E H 0.12
F C 0.08
T C 0.50
G C 0.59
P C 0.31
R C 0.19
F C 0.15
V C 0.13
P C 0.11
H C 0.09
V E 0.78
T E 0.86
V E 0.90
A E 0.67
V E 0.54
S E 0.46
A E 0.41
Y E 0.30
L E 0.19
T C 0.21
A H 0.68
D H 0.78
E H 0.82
A H 0.85
K H 0.88
K H 0.89
M H 0.90
F H 0.89
E H 0.79
S H 0.62
A H 0.33
C H 0.04
D C 0.38
G C 0.25
L C 0.21
K C 0.18
A E 0.46
Y E 0.47
T E 0.49
A E 0.60
T E 0.52
V E 0.37
D E 0.35
R E 0.21
V E 0.08
S C 0.01
T C 0.20
G C 0.20
T C 0.20
F H 0.25
F H 0.25
F H 0.21
Q H 0.21
C H 0.27
V H 0.33
F H 0.33
L H 0.33
L H 0.23
L H 0.14
Q C 0.59
T C 0.71
T C 0.83
P H 0.73
E H 0.75
V H 0.38
M H 0.22
E H 0.22
A H 0.14
G H 0.18
E H 0.22
H H 0.24
C H 0.26
K H 0.23
N H 0.19
H C 0.09
F C 0.40
N C 0.55
C C 0.66
S C 0.77
T C 0.84
T C 0.82
T C 0.54
P C 0.36
Y C 0.44
M C 0.47
P C 0.28
H C 0.09
L H 0.41
S H 0.41
L H 0.36
L H 0.27
Y H 0.19
A H 0.10
E H 0.02
L C 0.28
T C 0.40
E H 0.46
E H 0.63
E H 0.72
K H 0.73
K H 0.70
N H 0.74
A H 0.74
Q H 0.66
E H 0.54
K H 0.53
A H 0.44
Y H 0.26
T H 0.08
L C 0.12
D C 0.25
S C 0.40
S C 0.45
L C 0.62
D C 0.48
G C 0.28
L C 0.08
S E 0.14
F E 0.27
R E 0.34
L E 0.55
N E 0.67
R E 0.77
L E 0.84
A E 0.86
L E 0.86
C E 0.69
K E 0.51
T C 0.17
D C 0.47
T C 0.65
E C 0.61
D C 0.45
K C 0.24
T C 0.22
L C 0.20
E C 0.16
T C 0.11
W H 0.12
E E 0.05
T E 0.20
V E 0.36
A E 0.33
V E 0.31
C C 0.23
N C 0.41
L C 0.62
N C 0.79
P C 0.96
END

