
PFRMAT AL
TARGET T0096
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=4.73 
REMARK CONFIDENCE: MARGINAL  (90% confidence [ ZSCORE>=4.7 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1bi1_1
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and environment-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  1
PARENT 1bi1
M   1     L     4 
V   2     V     5 
I   3     D     6 
K   4     T     7 
A   5     T     8 
Q   6     E     9 
S   7     M    10 
P   8     Y    11 
A   9     L    12 
G  10     R    13 
F  11     T    14 
A  12     I    15 
E  13     Y    16 
E  14     E    17 
Y  15     L    18 
I  16     E    19 
I  17     E    20 
E  18     E    21 
S  19     G    22 
I  20     V    23 
L  31     T    24 
P  32     P    25 
A  33     L    26 
E  34     R    27 
R  35     A    28 
E  36     R    29 
L  37     I    30 
S  38     A    31 
E  39     E    32 
L  40     R    33 
I  41     L    34 
G  42     E    35 
V  43     Q    36 
T  44     S    37 
R  45     G    38 
T  46     P    39 
T  47     T    40 
L  48     V    41 
R  49     S    42 
E  50     Q    43 
V  51     T    44 
L  52     V    45 
Q  53     A    46 
R  54     R    47 
L  55     M    48 
A  56     E    49 
R  57     R    50 
D  58     D    51 
G  59     G    52 
W  60     L    53 
L  61     V    54 
T  62     V    55 
I  63     V    56 
Q  64     A    57 
H  65     S    58 
G  66     D    59 
K  67     R    60 
P  68     S    61 
T  69     L    62 
K  70     Q    63 
V  71     M    64 
TER
END

