
PFRMAT AL
TARGET T0096
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=4.40 
REMARK CONFIDENCE: GUESS     (50% confidence [ ZSCORE>=3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1qbja
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and environment-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  2
PARENT 1qbj_A
S   7     S   134 
P   8     I   135 
A   9     Y   136 
G  10     Q   137 
F  11     D   138 
A  12     Q   139 
E  13     E   140 
E  14     Q   141 
Y  15     R   142 
I  16     I   143 
I  17     L   144 
E  18     K   145 
S  19     F   146 
I  20     L   147 
W  21     E   148 
N  22     E   149 
N  23     L   150 
R  24     G   151 
F  25     E   152 
P  26     G   153 
P  27     K   154 
G  28     A   155 
T  29     T   156 
A  33     T   157 
E  34     A   158 
R  35     H   159 
E  36     D   160 
L  37     L   161 
S  38     S   162 
E  39     G   163 
L  40     K   164 
I  41     L   165 
G  42     G   166 
V  43     T   167 
T  44     P   168 
R  45     K   169 
T  46     K   170 
T  47     E   171 
L  48     I   172 
R  49     N   173 
E  50     R   174 
V  51     V   175 
L  52     L   176 
Q  53     Y   177 
R  54     S   178 
L  55     L   179 
A  56     A   180 
R  57     K   181 
D  58     K   182 
G  59     G   183 
W  60     K   184 
L  61     L   185 
T  62     Q   186 
I  63     K   187 
Q  64     E   188 
H  65     A   189 
G  66     G   190 
K  67     T   191 
P  68     P   192 
T  69     P   193 
K  70     L   194 
V  71     W   195 
N  72     K   196 
N  73     I   197 
F  74     A   198 
TER
END

