
PFRMAT AL
TARGET T0096
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=3.40 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: sugbp
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and environment-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  4
PARENT 1gca
M   1     M    17 
V   2     S    18 
I   3     V    19 
K   4     V    20 
A   5     R    21 
Q   6     K    22 
S   7     A    23 
P   8     I    24 
A   9     E    25 
G  10     K    26 
F  11     D    27 
A  12     G    28 
E  13     K    29 
E  14     S    30 
Y  15     A    31 
I  16     P    32 
I  17     D    33 
E  18     V    34 
S  19     Q    35 
I  20     L    36 
W  21     L    37 
N  22     M    38 
N  23     N    39 
R  24     D    40 
F  25     S    41 
P  26     Q    42 
T  29     N    43 
I  30     D    44 
L  31     Q    45 
P  32     S    46 
A  33     K    47 
E  34     Q    48 
R  35     N    49 
E  36     D    50 
L  37     Q    51 
S  38     I    52 
E  39     D    53 
L  40     V    54 
I  41     L    55 
G  42     L    56 
V  43     A    57 
T  44     K    58 
R  45     P    70 
T  46     A    71 
T  47     A    72 
L  48     A    73 
R  49     G    74 
E  50     T    75 
V  51     V    76 
L  52     I    77 
Q  53     E    78 
R  54     K    79 
L  55     A    80 
A  56     R    81 
R  57     G    82 
D  58     K    97 
G  59     A    98 
W  60     L    99 
L  61     D   100 
T  62     S   101 
I  63     Y   102 
Q  64     D   103 
K  67     K   104 
P  68     A   105 
T  69     Y   106 
K  70     Y   107 
V  71     V   108 
N  72     G   109 
N  73     T   110 
F  74     D   111 
W  75     S   112 
E  76     K   113 
T  77     E   114 
S  78     S   115 
G  79     G   116 
L  80     V   117 
N  81     I   118 
I  82     Q   119 
L  83     G   120 
E  84     D   121 
T  85     L   122 
L  86     I   123 
A  87     A   124 
R  88     K   125 
L  89     H   126 
D  90     W   127 
H  91     Q   128 
E  92     A   129 
S  93     N   130 
V  94     Q   131 
P  95     G   132 
Q  96     K   147 
L  97     G   148 
I  98     E   149 
D  99     P   150 
N 100     G   151 
L 101     H   152 
L 102     P   153 
S 103     D   154 
V 104     A   155 
R 105     E   156 
T 106     A   157 
N 107     R   158 
I 108     T   159 
S 109     T   160 
T 110     Y   161 
I 111     V   162 
F 112     V   163 
I 113     K   164 
R 114     E   165 
T 115     L   166 
A 116     N   167 
F 117     D   168 
R 118     K   169 
Q 119     G   170 
H 120     I   171 
P 121     Q   172 
D 122     T   173 
K 123     E   174 
V 127     Q   175 
L 128     L   176 
A 129     A   177 
T 130     L   178 
A 131     D   179 
N 132     T   180 
E 133     A   181 
V 134     M   182 
A 135     W   183 
D 136     D   184 
H 137     T   185 
A 138     A   186 
D 139     Q   187 
A 140     A   188 
F 141     K   189 
A 142     D   190 
E 143     K   191 
L 144     M   192 
D 145     D   193 
Y 146     A   194 
N 147     W   195 
I 148     L   196 
F 149     S   197 
R 150     G   198 
G 151     P   199 
L 152     N   200 
A 153     A   201 
F 154     N   202 
S 156     K   203 
G 157     I   204 
N 158     E   205 
P 159     V   206 
I 160     V   207 
Y 161     I   208 
G 162     A   209 
L 163     N   210 
I 164     N   211 
L 165     D   212 
N 166     A   213 
G 167     M   214 
M 168     A   215 
K 169     M   216 
G 170     G   217 
L 171     A   218 
Y 172     V   219 
T 173     E   220 
R 174     A   221 
I 175     L   222 
G 176     K   223 
R 177     A   224 
H 178     H   225 
Y 179     N   226 
A 181     K   227 
N 182     S   228 
E 184     S   229 
A 185     I   230 
R 186     P   231 
S 187     V   232 
L 188     F   233 
A 189     G   234 
L 190     V   235 
G 191     D   236 
F 192     A   237 
Y 193     L   238 
H 194     P   239 
K 195     E   240 
L 196     A   241 
S 197     L   242 
A 198     A   243 
L 199     L   244 
C 200     V   245 
S 201     K   246 
H 205     S   247 
D 206     G   248 
Q 207     A   249 
V 208     M   250 
Y 209     A   251 
E 210     G   252 
T 211     T   253 
V 212     V   254 
R 213     L   255 
R 214     N   256 
Y 215     D   257 
G 216     A   258 
H 217     N   259 
E 218     N   260 
S 219     Q   261 
G 220     A   262 
E 221     K   263 
I 222     A   264 
W 223     T   265 
H 224     F   266 
R 225     D   267 
M 226     L   268 
Q 227     A   269 
K 228     K   270 
N 229     N   271 
L 230     L   272 
P 231     A   273 
G 232     E   274 
D 233     G   275 
L 234     K   276 
A 235     G   277 
I 236     A   278 
Q 237     A   279 
G 238     D   280 
R 239     G   281 
TER
END

