
PFRMAT AL
TARGET T0096
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 1
PARENT 1lea
A    5 M 1
Q    6 K 2
S    7 A 3
P    8 L 4
A    9 T 5
G   10 A 6
F   11 R 7
A   12 Q 8
E   13 Q 9
E   14 E 10
I   16 V 11
I   17 F 12
E   18 D 13
S   19 L 14
I   20 I 15
W   21 R 16
N   22 D 17
N   23 H 18
R   24 I 19
F   25 S 20
P   26 Q 21
P   27 T 22
G   28 G 23
T   29 M 24
I   30 P 25
P   32 P 26
A   33 T 27
E   34 R 28
R   35 A 29
E   36 E 30
L   37 I 31
S   38 A 32
E   39 Q 33
L   40 R 34
I   41 L 35
G   42 G 36
V   43 F 37
T   44 S 39
R   45 P 40
T   46 N 41
T   47 A 42
L   48 A 43
R   49 E 44
E   50 E 45
V   51 H 46
L   52 L 47
Q   53 K 48
R   54 A 49
L   55 L 50
A   56 A 51
R   57 R 52
D   58 K 53
G   59 G 54
W   60 V 55
L   61 I 56
T   62 E 57
I   63 I 58
Q   64 V 59
H   65 S 60
G   66 G 61
K   67 R 64
P   68 G 65
T   69 I 66
K   70 R 67
V   71 L 68
N   72 L 69
N   73 Q 70
F   74 E 71
W   75 E 72
TER
PARENT NONE 76 239
TER
END

